Variations on a theme: diversification of cuticular hydrocarbons in a clade of cactophilic Drosophila
© de Oliveira et al; licensee BioMed Central Ltd. 2011
Received: 30 November 2010
Accepted: 23 June 2011
Published: 23 June 2011
We characterized variation and chemical composition of epicuticular hydrocarbons (CHCs) in the seven species of the Drosophila buzzatii cluster with gas chromatography/mass spectrometry. Despite the critical role of CHCs in providing resistance to desiccation and involvement in communication, such as courtship behavior, mating, and aggregation, few studies have investigated how CHC profiles evolve within and between species in a phylogenetic context. We analyzed quantitative differences in CHC profiles in populations of the D. buzzatii species cluster in order to assess the concordance of CHC differentiation with species divergence.
Thirty-six CHC components were scored in single fly extracts with carbon chain lengths ranging from C29 to C39, including methyl-branched alkanes, n-alkenes, and alkadienes. Multivariate analysis of variance revealed that CHC amounts were significantly different among all species and canonical discriminant function (CDF) analysis resolved all species into distinct, non-overlapping groups. Significant intraspecific variation was found in different populations of D. serido suggesting that this taxon is comprised of at least two species. We summarized CHC variation using CDF analysis and mapped the first five CHC canonical variates (CVs) onto an independently derived period (per) gene + chromosome inversion + mtDNA COI gene for each sex. We found that the COI sequences were not phylogenetically informative due to introgression between some species, so only per + inversion data were used. Positive phylogenetic signal was observed mainly for CV1 when parsimony methods and the test for serial independence (TFSI) were used. These results changed when no outgroup species were included in the analysis and phylogenetic signal was then observed for female CV3 and/or CV4 and male CV4 and CV5. Finally, removal of divergent populations of D. serido significantly increased the amount of phylogenetic signal as up to four out of five CVs then displayed positive phylogenetic signal.
CHCs were conserved among species while quantitative differences in CHC profiles between populations and species were statistically significant. Most CHCs were species-, population-, and sex-specific. Mapping CHCs onto an independently derived phylogeny revealed that a significant portion of CHC variation was explained by species' systematic affinities indicating phylogenetic conservatism in the evolution of these hydrocarbon arrays, presumptive waterproofing compounds and courtship signals as in many other drosophilid species.
The nested hierarchical nature of species due to shared ancestry has been useful in comparative biology to assess relative rates of phenotypic evolution . In a comprehensive comparative study, Blomberg et al.  showed that behavioral traits were more labile (weakly or uncorrelated with phylogeny) than body size, morphological, life-history, or physiological characters. Conversely, Wimberger and de Queiroz  found no significant difference in evolutionary lability between morphological and behavioral traits. Therefore, relative evolutionary rates of morphological and physiological vs. behavioral traits is still being debated [4, 5], and resolution may depend on the kinds of traits studied and the degree of phylogenetic resolution of focal species groups.
Among arthropods, common species-specific phenotypes that influence organismal water balance and also serve as contact pheromones, particularly in insects, are cuticular waxes composed of hydrocarbons [6–12]. In Drosophila, epicuticular hydrocarbon (CHC) components are usually sex-specific, species-specific and sometimes geographically variable [7, 13–18]. These molecules are integral to the waterproofing functions of the insect cuticle, providing resistance to desiccation and water loss [19–21]. Despite the involvement of CHCs with cuticular water flux, mate recognition, and in some cases reproductive isolation, little is known about the mechanisms responsible for their larger scale diversification because few studies have investigated how correlated CHC differences evolve in a phylogenetic context [reviewed in ]. Further, the nature of CHC variation can be both qualitative and quantitative [7, 13, 23]: CHC composition can be dynamic and change with age [24, 25], is influenced by temperature , larval-rearing substrates [26, 27], and members of the opposite sex [28–31] suggesting significant sources of variation that may inhibit attempts to map their evolution onto species/population phylogenies. Using groups of populations/species in various stages of divergence is essential if we are to gauge rates of evolution across a spectrum of genetic differences including the final stages of speciation . This way, we can gauge which phenotypes evolve before others, and attempt to identify causal factors responsible for divergence and perhaps the formation of new species .
Phylogeny of the D. buzzatiiCluster
Ecology and Biogeography of the D. buzzatiiCluster
All species of the D. buzzatii cluster are cactophilic so their ranges are associated with the distributions of their host plants (Figure 2). D. buzzatii cluster species feed and breed exclusively in necrotic cactus tissues (rots) [41, 47] and some species are oligophagic, while others appear to be more specialized (Figure 2). These species are distributed throughout the caatinga and Chaco morphoclimatic domains along a corridor of arid xeromorphic vegetation extending from the northeast to the southwest between the Amazonian and Atlantic rainforests of South America. Adjacent dry forests also include cacti, but as isolated populations. These isolates are thought to have resulted from repeated retractions and expansions of open vegetation during the Quaternary glacial and interglacial periods, respectively, affecting the differentiation and speciation of D. buzzatii cluster species [34, 44]. Nested clade analysis of Brazilian D. buzzatii cluster species suggested that these species have been distributed across Brazil at least since the Mid-Pleistocene . It is likely that these climatic alterations have promoted repeated waxing and waning of cactus populations in Brazil and elsewhere in South America.
Thus, the phylogeny, biogeography, and ecology of the D. buzzatii cluster should help us to understand phenotypic evolution among populations of these recently diverged species, some that can still hybridize in nature, and how sexually dimorphic and typically species-specific CHCs have evolved in these species. Therefore, we characterized the variation and chemical composition of CHCs in all seven species in the cluster so that we could uncover the role these compounds may play in desiccation resistance and as recognition signals within and between species. By mapping CHC variation onto a phylogeny of these species, we show that correlated groups of CHCs show discordant patterns of evolution with some CHCs showing significant phylogenetic signal and others evolving more rapidly.
Origin and Maintenance of Fly Stocks
Description of the collection sites for the D. buzzatii species cluster stocks used in this study.
(City and State)
Year of Collection
1. Santiago - Rio Grande do Sul (RS)
2. Serrana - São Paulo (SP)*
3. Morro do Chapéu - Bahia (BA)*
4. Osório - Rio Grande do Sul (RS)*
5. Furnas - Minas Gerais (MG)
6. Milagres - Bahia (BA)
7. Serra do Cipó - Minas Gerais (MG)
8. Pirenópolis - Goiás (GO)
9. Analândia - São Paulo (SP)
10. Cristalina - Goiás (GO)
11. Ibotirama - Bahia (BA)*
12. Tapia - Tucumán (TU)*
13. Milagres - Bahia (BA)*
14. Arraial do Cabo - Rio de Janeiro (RJ)
15. Macaé - Rio de Janeiro (RJ)
16. Mucuri - Bahia (BA)
17. Morro do Chapéu - Bahia (BA)*
18. Serra do Cipó - Minas Gerais (MG)
Chemical Analysis of CHCs
One population of each species (Table 1) was used to identify epicuticular hydrocarbon components in males and females. The most abundant CHCs were characterized by GCMS following Etges and Jackson . In short, hundreds of adults of each species were separated by sex, allowed to mature, and then rinsed with HPLC grade hexane in Biosil™ mini-columns. Extracts were dried at 40°C under a stream of nitrogen and sealed/stored at -20°C. Each extract was analyzed with a Hewlett Packard 5890 GC fitted with a 12-m HP-1 fused silica column programmed at 150°C to 300°C at 10°C/min and held at 300°C for 5 min. The injector and detector temperature (Hewlett Packard 5971 mass selective detector) was 280°C. Extracts were redissolved in hexane containing 100 ng/fly of docosane (C22) as an internal standard. The unsaturated CHCs were derivatized with dimethyl disulfide (DMDS), and the resulting thiomethyl derivatives were analyzed by GCMS to identify the positions of the double bonds .
CHC Variation among Populations and Species
Eighteen populations, including at least one geographical stock of each species, were used to quantify variation in male and female CHCs. Preliminary CHC classification was determined by comparing the retention times of each observed CHC component from the D. buzzatii cluster species with those of the D. mojavensis cluster . In all cases, the retention times of most of the major CHCs were very similar to those of D. mojavensis indicating a remarkable degree of CHC conservation among these distantly related species groups. Ten aged, virgin adult flies for each sex of 18 different populations (Table 1) were individually immersed in HPLC hexane for 10 minutes with agitation, dried at 40°C, stored at -20°C, and returned to the University of Arkansas. Each extract was redissolved in 5 μl heptane containing 360 ng of docosane (C22) as an internal standard . One μl of sample was analyzed by capillary gas-liquid chromatography in an automated Shimadzu GC-17H High Speed FID/GC fitted with an AOC-20i autosampler (Shimadzu Scientific, Columbia, MD). Injector and detector temperatures were set to 345°C with the injector port in split mode. Running temperatures started at 200°C and increased to 345°C at 10°C/min, with a hold at 345°C for 7 min .
CHC amounts were estimated by analysis of peak integrations using Class VP 4.2 software provided by Shimadzu. Each sample amount was normalized by the measured amount of docosane and all data were expressed as nanograms per fly of CHCs. We quantified amounts of 36 peaks in each sample after eliminating 18 peaks with areas that accounted for less than 1% of the total hydrocarbon abundance in at least one fly in all populations. All data were assessed for normality with PROC UNIVARIATE using SAS 9.1  and log10 transformations improved normality. Nested multivariate analysis of variance was used to assess CHC variation among species and populations nested within species were considered random effects. The main effects in the model included species, sex and population nested within species and the interactions were species × sex and × population nested within species.
Five canonical discriminant function (CDF) analyses (PROC CANDISC) were performed to summarize CHC variation along continuous scales representing orthogonal axes of CHC covariation that best separated populations/species and to help visualize group differences. Out of the 36 peaks scored, 15 minor peaks were eliminated prior to the CDF analyses due to missing values. Consequently, a total of 21 peaks were used in the five different CDF analyses performed. First, we carried out a CDF analysis using all data, i.e. 18 populations/species (Table 1) to explore the overall magnitude of CHC differentiation in our data. This procedure was followed by a linear discriminant function analysis (PROC DISCRIM) using the same dataset to classify individuals based on species, population and sex. Second, we performed a CDF analysis without the four populations of D. serido, i.e. 14 populations/species, due to large, unanticipated intraspecific CHC variation in this species (see results). Third, we used CDF analysis to generate CVs for character mapping, i.e. for those populations used in the phylogenetic reconstruction (see description below). Thirteen out of 18 populations from which data was available for both per gene and CHCs were used in the character evolution analysis. In this third analysis, besides the 13 populations/species of the D. buzzatii cluster we also included the three species of the D. mojavensis cluster. We did not pool the sexes (as in the first and second CDF analyses) because we were interested in sex-specific CHC evolution. We performed the CDF analysis with females and males together so that male and female species-specific CDF scores could be compared on a common scale, but separated the data by sex to evaluate CHC evolution in the character reconstruction analyses. Finally, a fourth and fifth CDF analyses were also used in character mapping and were similar to the third analysis, except that in the fourth analysis we did not include the species of the D. mojavensis cluster and in the fifth analysis the D. serido populations were excluded. For all five CDF analyses, Pearson correlation coefficients were calculated between individual CHC amounts and canonical scores for each CHC for the first five CVs with PROC CORR to determine which CHC peaks were significantly associated with these canonical variates. Lastly, we conducted stepwise discriminant analyses (PROC STEPDISC) for each of the five datasets used in the CDF analyses to evaluate which CHC peaks most contributed to the variation between populations.
We were also interested in whether geographic distance between populations distributed over such a large area (Figure 1) might explain some of the interspecific variation in CHCs due to factors like ambient ecological differences, sexual selection, or genetic drift. Our null hypothesis was that geographic distance measured in kilometers should be unrelated to overall CHC differences between populations. We performed Mantel tests using Manteller software  and compared female and male CHC matrices based on Euclidean distances with a geographic distance matrix of 18 populations/species. Pair-wise, great circle distances between populations were calculated using the "Haversine" formula .
Originally, we combined chromosomal inversion differences [41, 53] with the per gene  and mtDNA COI sequence data  to reconstruct phylogenetic relationships for the seven D. buzzatii cluster species. Chromosome inversions have high phylogenetic utility in Drosophila , but because only four inversions are unique and thus phylogenetically informative in the D. buzzatii species cluster (Figure 2), populations of the same species were all coded with the same inversions. For all species, inversions were coded as present (1) or absent (0). Although the phylogeny based on COI sequences did not recover all populations of the same species in the same clade , we thought the mtDNA data could still be useful in combination with chromosomal inversions and the per gene. However, the phylogeny produced by combining all three data sets was clearly driven by the COI sequence data (Additional File 1: Figure S1). We followed Santos et al.  in concluding that these mtDNA COI data did not provide clear phylogenetic relationships for these species, either alone or when combined with nuclear markers. Thus, only per + inversion data were used in the phylogenetic reconstruction.
We only used populations/species from the D. buzzatii cluster from which per gene and CHC data were available (13 out of 18 populations) since the reconstructed phylogeny was used later to study CHC evolution (see below). Populations used in the per phylogeny  are indicated in Table 1. We also included two species used as outgroups by Franco et al. , i.e. D. mojavensis and D. hydei. Because no CHC data were available for D. hydei this species was removed before the tree was used for reconstruction of CHC evolution. The published per sequences were aligned using Mega version 4 . Phylogenetic analysis of the per gene + chromosomal inversion data was performed using PAUP* 4.0 . Maximum parsimony was used to search for optimal tree(s) and heuristic searches were carried out with 100 random addition analyses and tree bisection reconnection (TBR) branch swapping. Nodal support was obtained using bootstrap analysis (1,000 replicates).
Mapping CHCs onto the Phylogeny
Patterns of character evolution were inferred by mapping CHC canonical variates (CVs) (See Statistical Analyses) onto the reconstructed phylogeny using Mesquite 2.6 . The CVs were mapped onto the first out of six most parsimonious trees instead of the strict consensus tree because one of the models used, Squared Change Parsimony Gradual (see below), relies on branch length information. Besides D. mojavensis, we also added the other two species of the D. mojavensis cluster, D. arizonae and D. navojoa, as a sister group to the D. buzzatii cluster. We included the D. mojavensis cluster in the analysis because its phylogeny is well established [58, 59], CHC data were available , and we were interested in its evolution as well. Because the number of species used in the phylogeny can influence the detection of phylogenetic signal  where higher numbers of species (17 - 20) can increase the power of the analysis, adding these species is justified and should help to avoid type II error, i.e. failure of rejecting the null hypothesis of no phylogenetic signal when in reality there was a significant relationship between CHC profiles and the phylogeny. We also performed two other character reconstruction analyses: one with just the populations/species of the D. buzzatii cluster and another without the populations of D. serido. In the former analysis we wanted to assess patterns of character evolution without the effects of outgroup species and in the latter analysis without the influence of these highly divergent populations.
Because reconstruction methods have different assumptions, they can lead to different reconstructions of ancestral states [60–62] and also influence the detection of phylogenetic signal. Therefore, we decided to employ three different parsimony methods, i.e. Linear Parsimony (LP), Squared Change Parsimony Gradual (SCPG), and Squared Change Parsimony Punctuated (SCPP) to determine whether they would yield different results. LP algorithms minimize the sum of the absolute values of changes on the branches of the tree . The LP method does not use branch length information and assumes stabilizing selection as the model of evolutionary change . Both SCPG and SCPP algorithms  minimize the sum of the squared changes on the branches of the tree. The SCPG method calculates squared changes based on branch lengths from the reconstructed tree assuming a Brownian motion model, i.e. steady gradual change (SCPG). Conversely, SCPP produces squared changes based on all branches lengths set to one with equal rates of evolution along each branch to simulate a model of punctuated evolution, where changes occur at speciation events [60, 65, 66].
We assessed congruence between the CHC canonical variates and the phylogeny (reference tree) by testing for the degree of phylogenetic signal revealed by these parsimony methods. Our null hypothesis was that non-phylogenetic influences such as developmental noise, ecological effects such as rearing conditions, or species-specific sexual selection have shaped CHC profiles such that CHC evolution was independent of species evolution. Our alternative hypothesis was that significant phylogenetic signal should be observed due to the phylogenetic affinities of these populations and so CHC variation should be correlated with species evolution. Evidence for phylogenetic signal in our data was evaluated in all three parsimony reconstruction algorithms by randomly modifying the reference tree, i.e. reshuffling the terminal taxa 10,000 times to generate a population of random trees for each character (female and male CVs). These trees with reshuffled taxa were then compared with the reference tree to test whether CHC distributions were more conserved than expected by chance alone. We concluded that there was phylogenetic signal if the number of parsimony character steps in the reference tree was less than in 95% of the trees with reshuffled taxa, i.e. values that fell on the extreme left of the distribution had fewer changes than expected by chance (Additional File 2: Figure S2). Alternatively, if CHC variation among closely related species was less than expected given their phylogenetic affinities, i.e., if the mean parsimony character steps for the reference tree fell on the extreme right of the reshuffled distribution, we interpreted this outcome as a result of more CHC differentiation than expected by chance alone [see  for details].
The detection of phylogenetic signal was also examined with the test for serial independence (TFSI), described in Abouheif , and available in the program Phylogenetic Independence 2.0 . We decided to use TFSI as an alternative to the parsimony models because it does not assume a model of evolutionary change or require branch lengths. While this can be problematic because topology alone cannot provide all information about species similarity , it can be a strength if the branch lengths or model of evolutionary change are not known or accurate . Furthermore, parsimony results can be misleading if the model of evolutionary change differs significantly from gradual change, i.e. when rates of evolution are rapid and/or rates of gains and losses are not equal [60, 62]. For all three parsimony methods and TFSI, p-values were corrected for multiple comparisons via false discovery rate (FDR) analysis [70, 71].
Chemical Composition of CHCs
Key mass spectra peaks used in the identification of CHCs from the D. buzzatii species cluster.
Diagnostic ions (m/z)
Dimethyl Disulfide Derivative
365, 393, 408
All species and sex
393, 421, 436
D. serido ♀; D. gouveai ♂; D. seriema ♀; D. koepferae ♀; D. antonietae ♀and ♂
D. serido ♂
D. gouveai ♀; D. seriema ♂; D. koepferae ♂; D. buzzatii ♀
(Z)-14-; (Z)-12-; and (Z)-10-tritriacontene
187, 215, 243, 313, 341, 369
D. gouveai ♀ and ♂; D.
seriema ♀ and ♂; D. koepferae ;D. ♀ buzzatii ♀ and ♂
D. koepferae ♂
All species and sex, except D. antonietae ♀ and ♂
All species and sex, except D. serido ♀ D. antonietae ♀ and ♂
D. serido ♀ and ♂
D. gouveai ♀ and ♂; D. seriema ♀ and ♂; D. koepferae ♀
D. serido ♀ and ♂
215, 243, 271, 299, 327, 355
D. gouveai ♀ and ♂; D. koepferae ♀ and ♂; D. buzzatii ♀ and ♂
35 ene 1
(Z)-16-; (Z)-14-; (Z)-12-pentatriacontene
215, 243, 271, 313, 341, 369
D. gouveai ♀ and ♂; D. seriema ♀ and ♂
243, 271, 313,
D. koepferae ♀ and ♂
215, 243, 341, 369
D. buzzatii ♀
35 ene 2
All species except D. serido ♀ and D. antonietae ♀ and ♂
35 ene 3
All species except D. serido ♀ and D. antonietae ♀ and ♂
D. serido ♀ and ♂
(Z, Z)-9,25-pentatriacontadiene or (Z, Z)-9,27-pentatriacontadiene
D. gouveai ♀ and ♂
D. seriema ♀ and ♂
D. serido ♀ and ♂
(Z, Z)-7,27-pentatriacontadiene or (Z, Z)-7,25-pentatriacontadiene
D. gouveai ♀ and ♂
D. seriema ♂
(Z)-16-; (Z)-18-; (Z)-14-heptatriacontene
243, 271, 299, 313, 341, 369
D. gouveai ♂
D. gouveai ♀
(Z)-16-; (Z)-18-; (Z)- 14-heptatriacontene
243, 271, 299, 313, 341, 369
D. gouveai ♂
D. gouveai ♀
(Z)-16-; (Z)-18-; (Z)-14-heptatriacontene
243, 271, 299, 313, 341, 369
D. gouveai ♀ and D. gouveai ♂
All other observed peaks were composed of either monoenes or dienes. Several peaks were comprised of mixtures of positional monoene isomers (Table 2) where the location of double bonds was mainly at even-numbered carbons (e.g. (Z)-8-tritriacontene and (Z)-10-pentatriacontene). Alkadienes were also present in more than one positional isomer, but the double bonds were located mostly at odd-numbered carbons (e.g. (Z, Z)-7,25-tritriacontadiene and (Z, Z)-5,25-pentatriacontadiene). The composition of some peaks was not determined because these samples proved difficult to derivatize with DMDS.
Quantitative Variation in CHC Profiles
Nested MANOVA results for 36 CHC peaks in 18 populations/species of D. buzzatii cluster species.
Source of Variation
Sex × Population(Species)
Species × Sex
Phylogenetic Reconstruction and CHC Character Mapping
Analysis of congruence between the chromosomal inversion plus per gene phylogeny and CHC data.
TEST FOR SERIAL INDEPENDENCY (TFSI)
Linear Parsimony (LP)
Squared Change Parsimony Gradual (SCPG)
Squared Change Parsimony Punctuated (SCPP)
Observed Mean C-Statistics
The first five canonical variates based on the total canonical structure of 13 populations/species of the D. buzzatii cluster plus the three species of the D. mojavensis cluster.
Because presence of phylogenetic signal, especially for CV1, seemed to be related to CHC differences between both clusters, we performed an analysis without the D. mojavensis cluster in order to test whether phylogenetic signal would be present in the D. buzzatii cluster only. In the absence of D. mojavensis cluster, CV1 did not display positive phylogenetic signal (Additional File 9: Table S5). However, positive phylogenetic signal was detected for female CV3 and/or CV4 and male CV4 and CV5 (Additional File 9: Table S5) illustrating that positive phylogenetic signal for different covarying groups of CHCs was present in the D. buzzatii cluster even in the absence of an outgroup.
Because D. serido populations exhibited such high within-species CHC divergence (Figure 3A, B), we also considered the possibility that D. serido CHCs may have influenced the character mapping results. To test this hypothesis, we repeated the CDF analysis (Additional File 10: Table S6) and reconstructed the phylogeny without the two D. serido populations. In the absence of D. serido, male and female CV1 displayed positive phylogenetic signal with all four methods. However, as mentioned above, presence of phylogenetic signal for CV1 was influenced by including the D. mojavensis cluster. More strikingly was the fact that without the D. serido populations, all three parsimony methods (except for male SCPG) and TFSI had three or four CVs that tested positive for phylogenetic signal (Additional File 11: Table S7). Thus, the exclusion of the two rather discordant D. serido populations had a huge influence on our ability to detect phylogenetic signal in the differentiation of D. buzzatii cluster CHCs.
Comparative analysis of quantitative variation in CHC profiles of the D. buzzatii species cluster revealed that CHC evolution has been somewhat conserved and associated with the evolutionary divergence of these species. Thus, CHC differentiation among these populations has not evolved so quickly as to erase evidence of phylogenetic affinity suggesting that variation in CHCs in this group of Drosophila can be predicted, to some extent, by species ancestry. Here, a key observation was the degree of CHC chemical conservation between the D. buzzatii and D. mojavensis clusters (Table 2) where most molecular structures, retention times, and carbon chainlengths were conserved, but species-specific CHC amounts varied quantitatively. The D. mojavensis cluster is also part of the mulleri complex, but is endemic to North America [59, 72, 73]. As these species groups are restricted to different continents and diverged ca 10-15 mya [74, 75], CHC biosynthesis and expression have been conserved over a large portion of the D. repleta group phylogeny. The most conserved chemical compounds were 2-methyloctacosane (2-MeC28) and 2-methyltriacontane (2-MeC30). These two compounds are not only shared within and between both clusters but are also found in a variety of other insect species . In retrospect, such conserved CHCs may not be surprising, but few attempts have been made to assess broad-scale variation in CHCs in groups of related species. Thus, CHC evolution in these D. repleta group species has a significant phylogenetic component based on a core group of C29, C31, C33, C35, C37 and C39 hydrocarbons (Additional File 3: Figure S3) with additional species and population-specific variations on this theme.
The multiple functional roles for insect cuticular hydrocarbons has been appreciated for some time . In arthropods with longer chain length CHCs (>20 carbon atoms), effects of desiccation are reduced because longer CHCs have higher melting temperatures [78, 79], consistent with observations that xeric adapted Drosophila species exhibit longer chain length CHCs than mesic species . Although saturated compounds, n-alkanes, provide increased protection against desiccation, branched and unsaturated compounds decrease melting temperatures and can cause increased rates of water loss across insect epicuticles . In Drosophila, alkenes and alkadienes have pheromonal activity in a number of species [14, 81–84]. In experimental populations of D. melanogaster that responded to increased desiccation conditions, CHC differences did evolve, but there were no associated changes in sexual isolation suggesting that CHCs involved in desiccation resistance were different from those used for mate choice . In other insects like paper wasps  and honeybees , branched alkanes and/or alkenes are more easily identified by other individuals than linear alkanes and therefore serve as recognition cues while n-alkanes function primarily to reduce water loss. Given the conservation of CHC compounds in the desert-adapted D. buzzatii and D. mojavensis species groups, significant sexual dimorphism in CHC profiles (Table 3), and the presence of branched and unsaturated molecules in the CHCs of all of these species, we expect that D. buzzatii cluster CHCs serve as both physiological mechanisms to control transcuticular water flux as well as in chemical communication, i.e. mate recognition. Nevertheless, the role of CHCs as pheromones has yet to be confirmed in the D. buzzatii cluster. Preliminary results revealed undetectable pheromonal activity in CHC perfuming experiments with D. seriema and D. buzzatii even though significant amounts of CHCs were transferred between males (Oliveira et. al., unpubl. data). However, we initially chose these species for perfuming studies because of the ability to detect CHC transfers. This result may not be representative of other, more closely related species in the cluster because D. seriema and D. buzzatii were so reproductively divergent (in mate choice trials, Oliveira et. al., unpubl. data) that alterations in CHCs had little effect despite the significant CHC differences between them. Further perfuming trials with all D. buzzatii cluster species are clearly needed.
The detection of positive phylogenetic signal using the three different data sets: (1) D. buzzatii + D. mojavensis cluster; (2) D. buzzatii cluster; and (3) D. buzzatii cluster (without D. serido populations) + D. mojavensis cluster (Table 4, Additional Files 9 and 11, respectively) supports the hypothesis that phylogenetic signal was strong enough to be detected by different methods independent of their assumptions. Moreover, positive phylogenetic signal was observed when just the D. buzzatii cluster species were used supporting that some CHCs were conserved in the cluster. These results were even more robust when the divergent D. serido populations were removed from the analysis. We hypothesize that CVs that were weakly correlated with the phylogeny, mainly CV2, were influenced by CHCs that may be responding to the ambient environment or other forces, i.e. these are traits involved in mate recognition like courtship songs, pheromones, or coloration that should evolve more rapidly due to sexual or stabilizing selection [88–91].
Contrasting results have been reported regarding the presence of phylogenetic signal in studies of character evolution that have implicated CHCs and other volatile compounds in mate and/or species recognition. For example, Jallon and David  concluded that "Hydrocarbon variations do not match the phylogeny" in eight species of the D. melanogaster group. Symonds and Elgar  reported little association between aggregation pheromone composition and phylogenetic relationships in bark beetles since closely related species were as different, if not more so, than more distantly related species. Conversely, Symonds and Wertheim  found that more closely related Drosophila species had more chemically similar aggregation pheromones and concluded that there was a positive relationship between phylogenetic distance and pheromone differentiation. Cuticular hydrocarbons in pine engraver beetles have been used to identify different species and thus have systematic value . Some phylogenetic trends in species-specific CHCs were also reported in Hawaiian swordtail crickets . However, known phylogenetic relationships among 78 ant species in five subfamilies showed "no similarity" to cuticular hydrocarbon differences based on chemical structures . Male courtship songs were homoplasic in the Drosophila willistoni species complex , showed evidence of diversification, character loss, and reversal in the D. repleta group , and converged in green lacewings . In birds, sexually selected traits like male plumage and bower characters exhibited low phylogenetic signal [97, 98], while male songs were more conserved . We suggest that phylogenetic diversification of insect CHCs may be more conservative than courtship songs or avian plumage characteristics because the complex underlying biochemical and physiological machinery required to synthesize and express CHCs in arthropods [9, 100, 101] may be more conserved than in other traits. Thus, similarity in cuticular hydrocarbon profiles among species may represent a phylogenetic constraint due to their mode of production. Certainly, more comparative studies involving mating signals will be necessary to determine whether the presence of phylogenetic signal is a rule or an exception for pheromonal or behavioral traits.
Evolution of the D. buzzatiicluster and CHCs
Attempts to resolve a phylogeny using the mtDNA data  failed to resolve all species into individual evolutionary lineages. Specifically, D. gouveai, D. serido, and D. seriema show substantial geographic variation and considerable phylogenetic incongruence (Additional File 1: Figure S1). Incomplete lineage sorting or hybridization could be responsible, as well as natural selection on mtDNA function . Phylogenetic reconstruction based on the nuclear period (per) gene by Franco et al.  resolved the relationships among D. gouveai, D. borborema and D. seriema (Figure 5). Although per grouped populations of D. serido together, they were not placed as a sister taxa of D. antonietae, as predicted by chromosomal inversion data (Figure 2). Therefore, the position of "D. serido" has yet to be resolved.
The large and very significant intraspecific differences in D. serido CHCs (Figure 3A) does not suggest a gradual model of CHC evolution, but were consistent with previously described differentiation between populations that inhabit northeastern Brazil in the caatinga (e.g. Milagres, Bahia) and those from the east coast of Brazil (e.g. Mucuri, Bahia and Arraial do Cabo, Rio de Janeiro, see Figure 1). The observation that the CHCs of the coastal D. serido population from Macaé, Rio de Janeiro did not match this pattern of differentiation further suggests that this stock was contaminated (see results for details). Here, the scale of intraspecific CHC variation was greater than interspecific variation for the remaining six species, and included multiple CHC components (Figure 4). Genetic divergence between populations of D. serido in these regions includes mtDNA haplotype differentiation , cytological differences, amounts of heterochromatin in metaphase chromosomes , and frequency differences of polymorphic inversions [41, 104]. These observations together with our results showing large intraspecific CHC differences strongly suggest the presence of several more cryptic species in this group.
The evolution of phenotypes and how they are shaped by phylogenetic history is a long-standing issue . Our comparative approach revealed that CHC compounds were highly conserved among species. Quantitative differences in CHC profiles were more prominent yet CHCs were species-, population-, and sex-specific. The evolution of CHCs was not homogeneous as some peaks were more conserved and retained phylogenetic signal while others seemed to be evolving faster. Comparative approaches to understanding phenotypes such as CHCs with multiple functions and courtship songs in Drosophila have provided some insight into the patterns of trait evolution for phenotypes likely associated with mating success and reproductive isolation, as well as the challenges of xeric environments caused by desiccation and cuticular water loss. For understanding of CHC evolution, future analyses of multiple phenotypes in such groups will be necessary to evaluate whether CHC components influence water balance and/or have pheromonal activity and to determine how the type and quantity of these compounds evolve during the diversification of populations and species.
We thank G. Almeida and A. Tripodi for help with the GC, P.R. Epifânio for technical assistance, and W. Maddison and M. Laurin for help with Mesquite. F.F. Franco and A.L.H. Esguicero assisted with field collection of cactus and flies. WJE and CCO thank L. Jackson for revealing the secrets of Drosophila hydrocarbon GCMS and for his hospitality in Bozeman. We also thank M.G. Ritchie and D.C.S.G. Oliveira for their comments on an earlier version of the manuscript and three anonymous reviewers for valuable criticisms and insights. Funding was provided by a supplement to National Science Foundation DEB-0211125 to WJE, a Dissertation Research Award from the J. William Fulbright College of Arts & Sciences, University of Arkansas to CCO, and grants from FAPESP, CNPq and USP to MHM and FMS.
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