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Table 1 LSF/GRH sequences identified by BLAST searches.

From: The evolutionary diversification of LSF and Grainyhead transcription factors preceded the radiation of basal animal lineages

Species

 

Protein

3E-value

Accession

Choanoflagellata

    

1,2 *Monosiga brevicollis

Mob

LSF-like

3e-10

jgi| Monbr1| 29664| fgenesh2_pg.scaffold_37000034

Fungi/Ascomycota

    

1,2 *Aspergillus niger

Asn

LSF-like1

8e-18

jgi| Aspni1| 174592| e_gw1.2.1262.1

1,2 *Aspergillus niger

Asn

LSF-like2

1e-6

jgi| Aspni1| 206941| estExt_GeneWisePlus.C_21219

2 *Mycosphaerella fijiensis

Myf

LSF-like

7e-39

jgi| Mycfi1| 87221| estExt_fgenesh1_pg.C_60133

2 *Mycosphaerella graminicola

Myg

LSF-like

9e-8

jgi| Mycgr3| 76636| estExt_Genewise1Plus.C_chr_110062

2 *Trichoderma virens

Trv

LSF-like

2e-5

jgi| Trive1| 37466| e_gw1.6.78.1

Fungi/Basidiomycota

    

*Phanerochaete chrysosporium

Phc

 

.058

jgi| Phchr1| 428| fgenesh1_pg.C_scaffold_1000428

*Sporobolomyces roseus

Spr

 

.014

jgi| Sporo1| 4513| gw1.5.455.1

Fungi/Zygomycota

    

1,2 *Phycomyces blakesleeanus

Phb

LSF-like1

2e-32

jgi| Phybl1| 75515| estExt_fgeneshPB_pg.C_10328

1,2 *Phycomyces blakesleeanus

Phb

LSF-like2

8e-14

jgi| Phybl1| 63864| fgeneshPB_pg.8__95

Metazoa/Annelida

    

1,2*Capitella species

Cap

GRH

7e-41

jgi| Capca1| 198092| fgenesh1_pg.C_scaffold_3000030

1,2*Capitella species

Cap

LSF

e-119

>jgi| Capca1| 222821| estExt_fgenesh1_pg.C_600043

Metazoa/Arthropoda

    

Anopheles gambiae

Ang

GRH

 

ref| XP_308698.4|

Anopheles gambiae

Ang

LSF

 

ref| XP_315571.4|

1,2 *Daphnia pulex

Dap

GRH

8e-43

jgi| Dappu1| 64332| e_gw1.171.21.1

1,2 *Daphnia pulex

Dap

LSF

e-127

jgi| Dappu1| 192185| estExt_Genewise1Plus.C_50175

1,2 Drosophilia melanogaster

Drm

GRH

**

ref| NP_476842.2|

1,2 *Drosophilia melanogaster

Drm

Gemini

**

ref| NP_610556.1|

Metazoa/Chordata

    

1,2 *Branchiostoma floridae

Brf

GRH

e-129

jgi| Brafl1| 106909| fgenesh2_pg.scaffold_554000005

1,2 *Branchiostoma floridae

Brf

LSF

e-146

jgi| Brafl1| 129980| estExt_fgenesh2_pg.C_4020027

1,2 *Ciona intestinalis

Cii

GRH

e-107

jgi| Cioin2| 262638| gw1.01q.820.1

1,2 *Ciona intestinalis

Cii

LSF

e-141

jgi| Cioin2| 262956| gw1.03q.546.1

*Fugu rubripes

Fur

GRH

0

jgi| Takru4| 570042| e_gw2.138.33.1

*Fugu rubripes

Fur

LSF

0

jgi| Takru4| 710919| fgh5_pm.C_scaffold_60000044

Homo sapiens

Hos

CP2

 

ref| NP_005644.2|

Homo sapiens

Hos

CP2like3

 

ref| NP_079191.2|

Homo sapiens

Hos

GRHL1

 

gb| AAH67519.1|

1,2 Homo sapiens

Hos

GRHL2

 

gb| AAH69633.1|

1,2 Homo sapiens

Hos

LBP1a

 

gb| AAH47235.1|

Homo sapiens

Hos

LBP9

 

ref| NP_055368.1|

Homo sapiens

Hos

LBP32

 

gb| AAF32276.1| AF198489_1

Homo sapiens

Hos

SOM1

 

ref| NP_067003.2|

Mus musculus

Mum

BOM

 

AAM22619

Mus musculus

Mum

CP2

 

ref| NP_258437.1|

Mus musculus

Mum

CRTR-1

 

NP_076244

Mus musculus

Mum

NF2d9

 

AAC52244

Metazoa/Cnidaria

    

1,2 *Nematostella vectensis

Nev

GRH1

2e-49

jgi| Nemve1| 95157| e_gw.38.94.1

1,2 *Nematostella vectensis

Nev

LSF

3e-88

jgi| Nemve1| 189242| estExt_GenewiseH_1.C_1380090

Metazoa/Ctenophora

    

1,2* Vallicula multiformis

Mnl

GRH

 

EST

Metazoa/Mollusca

    

1,2 *Lottia gigantea

Log

GRH

3e-52

jgi| Lotgi1| 157385| fgenesh2_pg.C_sca_14000008

1,2 *Lottia gigantea

Log

LSF

e-122

jgi| Lotgi1| 166840| fgenesh2_pg.C_sca_61000088

Metazoa/Placozoa

    

2 *Trichoplax adhaerens

Tra

GRH-like

4e-20

jgi| Triad1| 25702| e_gw1.5.1214.1

Metazoa/Porifera

    

1,2 *Amphimedon queenslandica

Amq

GRH

7e-55

Not Available

1,2 *Amphimedon queenslandica

Amq

LSF

4e-49

Not Available

Plantae

    

*Selaginella moellendorffii

Sem

 

.019

jgi| Selmo1| 411196| fgenesh2_pg.C_scaffold_14000249

*Chlamydomonas

Chl

 

.042

jgi| Chlre3| 194996| estExt_fgenesh2_pg.C_840034

  1. 1Sequence included in MEME analysis; 2Sequence included in phylogenetic analysis; 3 Expectation value of match to human query (either GRHL24 or LBP1a5) observed during BLAST searches. Asterisks identify newly acquired sequences.