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Table 3 Numbers of single nucleotide polymorphisms within and between clades A and B.

From: A Δ11 desaturase gene genealogy reveals two divergent allelic classes within the European corn borer (Ostrinia nubilalis)

 

Total sites

Polymorphic

Sites

Fixed

Differences

Polymorphic A Monomorphic B

Polymorphic B Monomorphic A

Shared

Polymorphism

3' Exon 1

11

1

0

1

0

0

   Intron 1

105

11

0

8

3

0

   Exon 2

338

24

10 (2R/8S)

11 (5R/6S)

2 (1R/1S)

1

   Intron 2

903

73

14

32

25

2

5' Exon 3

8

0

0

0

0

0

Total

1365

109

24

52

30

3

  1. These counts do not include the three recombinant sequences; therefore, the total number of polymorphic sites is less than is shown in Table 2 (recombinant sequences add 11 polymorphic sites). Also, this analysis omits any sequence position containing a gap and therefore does not include insertion deletion polymorphism. R = replacement substitution and S = silent substitution.