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Figure 1 | BMC Evolutionary Biology

Figure 1

From: Multiple source genes of HAmo SINE actively expanded and ongoing retroposition in cyprinid genomes relying on its partner LINE

Figure 1

Alignment of 34 new HAmo members isolated based on the bead-probe capture from eight species. Hmo: Hypophthalmichthys molitrix; Amo: Aristichthys nobilis; Scu: Squaliobarbus curriculus; Eba: Elopichthys bambusa; Cal: Cutler alburnus; Sda: Saurogobio dabryi; Xar: Xenocypris argentea; Cca: Cyprinus carpio. 3 members (Scu_F_270, Scu_F_156, Sda_F_9) are not shown because they have too long insertion in the central region. The top of alignment is the consensus sequence which is identical to the HAmo SINE consensus sequence in silver carp and bighead carp. The tRNA-related region and LINE2-derived region are shown by thick bar. Dashes indicate gaps inserted to improve the alignment. Nucleotides at the position over 55% of similarity are highlighted. The GenBank accession numbers of them are as follows: GQ370825-GQ370860.

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