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Figure 2 | BMC Evolutionary Biology

Figure 2

From: Multiple source genes of HAmo SINE actively expanded and ongoing retroposition in cyprinid genomes relying on its partner LINE

Figure 2

Comparison of consensus sequences of four HAmo SINE subfamilies, type I, II, III and IV. The tRNA-derived region of three SINE families and the tRNAlys (CUU) in rabbit are aligned. The different family-specific regions represented the most diagnostic nucleotides. The tail regions of these SINEs and their partner LINEs tail are compared. When most of nucleotides at a given position are identical, they are shaded. The GenBank accession numbers of novel HAmo LINE2 sequences are as follows: GQ370975-GQ370988.

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