From: Sequence variation and selection of small RNAs in domesticated rice
Small RNA | O. sativa | O. rufipogon | Target | Candidate Status | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
 | Indicasubgroup | Japonicasubgroup |  |  |  |  |  | ||||
 | N | D | HKA- P | N | D | HKA- P | N | D | HKA- P |  |  |
MIR164e | 21 | -1.90* | 0.101 | 21 | 1.18 | 0.285 | 10 | -1.04 | 0.447 | NAC | Putative |
MIR390 | 25 | -1.21 | 0.106 | 20 | -0.09 | 0.014 | 11 | -1.23 | 0.257 | TAS3 | Putative |
MIR395a-b | 27 | -1.56 | NA | 21 | -1.94* | NA | 11 | -1.49 | NA | APS/AST | Putative |
TAS3a2 | 28 | -1.86* | 0.029 | 24 | -0.85 | 0.158 | 10 | -1.35 | 0.503 | ARF | Putative |
AK120922 | 25 | 0.26 | 0.003 | 18 | -1.77 | 0.055 | 11 | -2.05* | 0.250 | Unknown | ND |
MIR164a | 25 | 1.54 | 0.129 | 22 | -1.31 | 0.215 | 11 | -0.84 | 0.433 | Unknown | ND |
MIR164c | 23 | -0.51 | 0.167 | 23 | -0.63 | 0.297 | 8 | 0.47 | 0.294 | NAC | ND |
MIR164d | 25 | -0.48 | 0.147 | 21 | -1.29 | 0.260 | 12 | -1.54 | 0.464 | NAC | ND |
MIR166f | 29 | -1.02 | 0.161 | 23 | -0.81 | 0.342 | 10 | -0.20 | 0.419 | HD-ZIP | ND |
MIR395i-k | 25 | 0.98 | 0.106 | 18 | -0.52 | 0.248 | 9 | -0.60 | 0.245 | APS/AST | ND |
MIR396f | 21 | -0.54 | 0.089 | 20 | 0.76 | 0.288 | 10 | -0.68 | 0.470 | GRL | ND |
MIR399a | 27 | 0.35 | 0.099 | 24 | -0.68 | 0.278 | 14 | 1.21 | 0.403 | PT | ND |
MIR399d | 23 | -2.37* | 0.107 | 22 | -0.87 | 0.002 | 12 | -2.04* | 0.255 | PT | ND |
MIR399i | 22 | -0.95 | 0.102 | 22 | -1.08 | 0.196 | 11 | -1.03 | 0.442 | PT | ND |
MIR440 | 25 | 0.04 | 0.097 | 20 | -0.57 | 0.137 | 14 | -1.58 | 0.339 | Unknown | ND |
MIR443 | 29 | 0.15 | 0.148 | 21 | -1.57 | 0.274 | 9 | -0.39 | 0.301 | Unknown | ND |
MIR1318 | 22 | 0.34 | 0.078 | 21 | -0.65 | 0.227 | 12 | -0.45 | 0.439 | Unknown | ND |
MIR1432 | 26 | 0.20 | 0.081 | 22 | -1.30 | 0.176 | 10 | 0.57 | 0.382 | EF | ND |
MIR1862d | 21 | 0.71 | 0.113 | 20 | -0.14 | 0.270 | 9 | -1.88* | 0.394 | NAC | ND |
MIR1867 | 24 | -1.21 | 0.094 | 24 | -1.11 | 0.280 | 10 | -0.94 | 0.493 | Unknown | ND |