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Table 2 Genetic diversity of 19 populations of Cinnamomum kanehirae estimated using Chs and Lfysequences.

From: Historical spatial range expansion and a very recent bottleneck of Cinnamomum kanehiraeHay. (Lauraceae) in Taiwan inferred from nuclear genes

 

Chs

 

N

H

Hd

π(× 10-3)

θ(S)

(× 10-3)

Tajima's D(P)

Fu's Fs(P)

Raggedness index

Population

KW

6

3

0.733 ± 0.155

6.91 ± 1.88

6.19 ± 3.42

-0.027(0.757)

0.094(0.944)

0.5067

NC

10

8

0.889 ± 0.075

7.50 ± 1.33

6.66 ± 3.20

-0.018(0.788)

-0.731(0.725)

0.0844

TH

6

4

0.800 ± 0.172

6.49 ± 2.84

7.56 ± 4.07

-0.112(0.274)

0.450(0.633)

0.6267

TP

10

5

0.844 ± 0.080

7.33 ± 0.93

5.55 ± 2.75

-0.022(0.974)

-0.665(0.886)

0.1368

ALS

10

6

0.844 ± 0.080

8.65 ± 1.08

6.66 ± 3.20

-0.296(0.976)

-0.551(0.937)

0.0756

CT

30

17

0.917 ± 0.030

7.20 ± 0.40

4.76 ± 1.95

-0.033(0.994)

-2.684(0.406)

0.0256

WC

5

4

0.800 ± 0.164

5.65 ± 1.45

4.52 ± 2.76

-0.041(0.987)

0.061(0.869)

0.2800

WH

5

4

0.900 ± 0.161

7.85 ± 2.20

8.29 ± 4.66

0.011(0.314)

-0.369(0.760)

0.3100

FKS

22

8

0.732 ± 0.090

8.09 ± 0.98

5.60 ± 2.35

-0.089 (0.969)

-0.486(0.803)

0.1135

HNS

5

6

1.000 ± 0.126

7.22 ± 2.51

8.29 ± 4.66

-0.043(0.149)

0.166(0.104)

0.1600

KS

21

7

0.786 ± 0.058

4.96 ± 0.33

3.05 ± 1.49

-0.053(0.993)

-1.000(0.903)

0.0986

TN

7

5

0.524 ± 0.209

3.89 ± 2.33

5.13 ± 2.80

-0.066(0.119)

0.357(0.843)

0.1950

CL

6

5

0.733 ± 0.155

5.23 ± 1.27

4.13 ± 2.44

0.022(0.970)

-0.082(0.933)

0.5067

CP

17

7

0.515 ± 0.145

3.72 ± 1.09

3.71 ± 1.79

-0.035(0.541)

0.105(0.509)

0.3279

FL

6

4

0.867 ± 0.129

7.64 ± 1.53

6.88 ± 3.75

0.010(0.833)

-0.451(0.878)

0.2756

HKL

16

5

0.650 ± 0.075

5.14 ± 0.46

3.31 ± 1.66

-0.062(0.989)

-0.281(0.961)

0.3197*

TML

10

4

0.778 ± 0.091

5.65 ± 0.85

4.44 ± 2.29

-0.041(0.923)

-0.335(0.931)

0.1590

YF

10

4

0.733 ± 0.101

5.44 ± 0.64

3.88 ± 2.06

-0.011(0.984)

-0.553(0.940)

0.2696

YL

8

3

0.714 ± 0.123

5.16 ± 0.82

3.63 ± 2.05

-0.023(0.995)

-0.115(0.958)

0.2041

Region

NW

32

10

0.853 ± 0.039

7.35 ± 0.57

5.46 ± 2.15

-0.022(0.919)

-1.308(0.771)

0.0332

WC

50

20

0.906 ± 0.024

7.55 ± 0.31

4.56 ± 1.74

-0.048(0.994)

-3.671(0.583)

0.0114

SW

55

20

0.876 ± 0.026

7.84 ± 0.29

4.46 ± 1.69

-0.014(0.999)

-3.388(0.643)

0.0251

SE

73

14

0.679 ± 0.041

5.11 ± 0.21

3.23 ± 1.28

-0.034(0.953)

-1.019(0.676)

0.2150

Total

210

41

0.841 ± 0.019

7.16 ± 0.19

3.71 ± 1.25

-0.064(0.999)

-4.405(0.255)

0.0186

 

Lfy

 

N

H

Hd

π (× 10 -3 )

θ ( S )

(× 10 -3 )

Tajima's D ( P )

Fu's Fs ( P )

Raggedness index

Population

KW

6

4

0.867 ± 0.129

1.89 ± 0.47

1.78 ± 1.23

-0.022(0.682)

-0.282(0.197)

0.1867

NC

12

3

0.318 ± 0.164

1.04 ± 0.54

1.34 ± 0.88

-0.051(0.262)

0.269(0.480)

0.4860

TH

8

3

0.714 ± 0.123

2.12 ± 0.37

1.56 ± 1.06

0.027(0.971)

-0.800(0.949)

0.1225

TP

7

4

0.857 ± 0.102

6.56 ± 1.61

6.62 ± 3.41

-0.063(0.519)

-0.356(0.915)

0.1474

ALS

4

2

0.667 ± 0.204

0.90 ± 0.28

0.74 ± 0.74

-0.002(0.883)

0.065(0.852)

0.5556

CT

3

2

0.667 ± 0.314

0.90 ± 0.42

0.90 ± 0.90

-

-

0.5556

WC

4

4

1.000 ± 0.177

3.15 ± 0.82

2.95 ± 2.01

-0.044(0.806)

0.059(0.067)

0.2222

WH

6

2

0.333 ± 0.215

0.45 ± 0.29

0.59 ± 0.59

-0.003(0.240)

0.154(0.568)

0.2222

FKS

19

4

0.456 ± 0.132

1.50 ± 0.46

1.93 ± 1.04

-0.035(0.277)

0.150(0.550)

0.3502

HNS

8

2

0.571 ± 0.094

2.32 ± 0.38

1.56 ± 1.06

-0.007(0.994)

-0.171(0.985)

0.8367*

KS

20

11

0.916 ± 0.038

4.11 ± 0.93

5.33 ± 2.24

-0.042(0.188)

-0.797(0.045)

0.0680

TN

3

2

0.667 ± 0.314

6.31 ± 2.97

6.31 ± 4.23

-

-

1.0000

CL

6

3

0.733 ± 0.155

6.49 ± 1.30

5.33 ± 2.95

-0.015(0.957)

-0.091(0.973)

0.3467

CP

13

8

0.885 ± 0.070

7.87 ± 1.06

8.27 ± 3.56

-0.035(0.406)

-1.884(0.812)

0.1142

FL

5

4

0.900 ± 0.161

8.38 ± 1.93

7.78 ± 1.33

-0.003(0.822)

-0.207(0.792)

0.3300

HKL

20

7

0.789 ± 0.068

5.69 ± 0.59

5.33 ± 2.24

-0.037(0.645)

-2.025(0.945)

0.5288**

TML

8

4

0.750 ± 0.139

2.22 ± 0.36

1.56 ± 1.06

-0.029(0.993)

-1.148(0.724)

0.1263

YF

8

1

0.000 ± 0.000

0.00 ± 0.00

0.00 ± 0.00

-

-

0.0000

YL

10

3

0.511 ± 0.164

1.98 ± 1.13

2.87 ± 1.57

-0.035(0.113)

0.263(0.796)

0.1669

Region

NW

33

6

0.674 ± 0.078

2.81 ± 0.66

4.33 ± 1.73

-0.094(0.130)

-0.088(0.683)

0.0435

WC

17

9

0.890 ± 0.054

2.60 ± 0.33

2.40 ± 1.24

0.000(0.659)

-6.344(0.634)

0.0614

SW

50

15

0.871 ± 0.032

3.11 ± 0.49

4.83 ± 1.76

-0.064(0.106)

-1.005(0.012)

0.0448

SE

70

21

0.896 ± 0.019

6.25 ± 0.36

7.29 ± 2.32

0.000(0.254)

-6.017(0.606)

0.0553

Total

170

35

0.895 ± 0.015

4.79 ± 0.31

8.05 ± 2.22

-0.041(0.062)

-3.496(0.001)

0.0211

  1. Populations and regions are defined in Table 1.
  2. Tajima's D and Fu's Fs were estimated based on the coalescent simulations with 1000 replicates in consideration of recombination.
  3. * P < 0.05; ** P < 0.00001 for the raggedness index reject the null hypothesis of expectation under a sudden demographic expansion model.
  4. N is the number of sequences; H is the number of haplotypes; Hd is the haplotype diversity; π and θ are the nucleotide diversity estimates.