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Table 2 Pairwise comparison between mouse Pl10 (mPl10) and the non-annotated homologous regions in eutheria.

From: The molecular evolution of PL10 homologs

Genomic Position of Non-annotated PL10Homologs

Identity with m Pl10(%)

Alignment Coverage with m Pl10(%)*

Aligned Segment NumberΔ

Putative Peptide Length (aa)#

Human Chr4

(HSA4)

80.08

100.00

1

84

Human ChrX

(HSAX)

78.52

98.38

2 (Ins: 8958 bp)

241(DDX3Y)

Chimp Chr4

(PTR4)

74.83

81.93

1

84

Chimp ChrX

(PTRX)

78.37

98.34

2 (Ins: 1134 bp; Ns: 3010 bp)

472(DDX3X)

Orangutan Chr4

(PPY4)

79.80

74.18

2 (Ns: 463 bp)

132

Orangutan ChrX

(PPYX)

80.94

67.42

1

124(DDX3Y)

Mouse Chr1

(MMU1)

79.45

95.41

1

349(DDX3X)

Rat Chr19

(RNO19)

80.27

51.08

3 (Ns: 1509 bp; Ins: 316 bp; Gap: 962 bp)

192(DDX3X)

Dog Chr22

(CFA22)

73.00

58.00

1

N/A

Horse Chr17

(ECA17)

75.98

96.82

1

N/A

Cow Chr15

(BTA15)

81.00

72.52

1

N/A

  1. * The alignment coverage was calculated based on the pairwise alignment between the mouse Pl10 and identified homologous regions.
  2. Δ Ns: the homologous region contains incomplete sequences. Ins: the homologous region is interrupted by non-homologous sequences. Gap: part of mPl10 was not alignable with the detected homologous sequences.
  3. # The peptides were predicted via GENSCAN [18]. The protein name in parenthesis indicated the matched entries with lowest e-value in blastp analysis. N/A: not applied.
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BMC Ecology and Evolution

ISSN: 2730-7182

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