Skip to main content

Advertisement

Table 2 Intron gain by tandem duplication as suggested by proto-splice sites.

From: Some novel intron positions in conserved Drosophila genes are caused by intron sliding or tandem duplication

FBgn Intron Proto-splice site consensus of the surrounding CDS (all Drosophila species in alignment) Percentile of the smallest score per position within the reference set RS (RP)
   Splice site consensus of introns    
0002526 1460-0 CAGGTSATT//YGGATTCCATCAGG 2.99 (96.61) // 7.52 (92.18)
   CAGgtaagw//cattgtccaccagG 75.49 // 18.99
0029747 200-0 CAGGTHCTH//YAARMGWKTRCAGG 0.38 (91.34) // 9.77 (93.46)
   CAGgtaskk//bshsuymywdyagG 1.23 // 11.28
  207-0 CAGGCACGC//CAAGTCAYTGCAGG 0.48 (92.31) // 21.59 (96.80)
   CAGgtrrgy//tktcssmtkgcagG 29.43 // 30.97
0030661 211-0 GAGGTTATC//CCGAAATTTTGAGG 1.72 (95.60) // 0.25 (74.97)
   GAGgtgaga//agtgcactttcagG 56.04 // 38.86
0038300 44-0 CAGGCGCTT//TCAATGCCTGCAGG 0.23 (88.73) // 36.08 (98.49)
   CAGgtaagc//cgtttatttttagG 72.27 // 69.96
  54-0 AAGGTGGAG//RCCGCCTTCMAAGG 2.22 (96.17) // 2.47 (86.57)
   AAGgtaagw//hbyymykukyyagG 80.74 // 8.28
0050101 251-0 AAGGTGCCC//CGTCCATATCAAGG 0.90 (94.17) // 3.97 (89.17)
   AAGgtaaga//gttaatcatctagG 80.74 // 17.36
  1. For details of the reference data set and score generation see the Methods section. Percentile values in brackets are with respect to the RP reference set. Consensus nts: B = not A, D = not C, H = not G, K = G or T, M = A or C, R = A or G, S = C or G, U = not T, W = A or T, Y = C or T.