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Table 1 Kinesin Light Chain Gene Transcription Profile By Illumina Sequencing

From: Evolutionary analysis of the kinesin light chain genes in the yellow fever mosquito Aedes aegypti: gene duplication as a source for novel early zygotic genes

Transcript ID/Query

CDS Length

0-2 hr

2-4 hr

4-8 hr

8-12 hr

AAEL011410-RA

1419

0 (0)

250 (366)

405 (728)

0 (0)

AAEL014967-RA

1419

0 (0)

240 (352)

436 (784)

1 (4)

AAEL012472-RA

1536

62 (193)

1103 (1493)

311 (516)

140 (516)

  1. Notes: 0-2, 2-4, 4-8, and 8-12 hr indicate time ranges from which RNA was isolated from developing Ae. aegypti embryos. Raw values of the three transcripts in the four samples (number of hits from BLAST using an E-value cutoff of 1e-7) are given at left. Normalized values (in parentheses) are calculated as the raw values divided by the transcript (CDS) length, then divided by the total number of reads matching all annotated mRNA transcripts from each sample, and multiplied by 1e10. The total number of reads matching all annotated mRNA transcripts from each sample time point was: 0-2 hr (2087707); 2-4 hr (4810435); 4-8 hr (3920821); 8-12 hr (1767898). See Additional File 1 for a summary of the Illumina data. A FASTA file of all Illumina sequence hits that match the three kinesin light chain transcripts in all four samples is provided as Additional File 2.