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Table 2 Average quartet distances between the model trees and the ML trees inferred from the different trimmed multiple sequence alignments

From: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

   Level of divergence
   ×1 ×2 ×3
initial   0.0477 0.0457 0.0609
BMGE (BLOSUM30) 0.0462 0.0383 0.0427
BMGE (BLOSUM62) 0.0444 0.0384 0.0859
BMGE (BLOSUM95) 0.0448 0.0404 0.0935
Gblocks (relaxed) 0.0445 0.0414 0.0584
trimAl (strictplus) 0.0462 0.0445 0.0539
trimAl (automated1) 0.0457 0.0436 0.0519
Noisy   0.0621 0.0437 0.0430
  1. For each column, the best (i.e. lower) distance is written in boldface characters. Average quartet distances that are not significantly different to this best value (as assessed by a sign test) are underscored.