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Table 2 Average quartet distances between the model trees and the ML trees inferred from the different trimmed multiple sequence alignments

From: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

  

Level of divergence

  

×1

×2

×3

initial

 

0.0477

0.0457

0.0609

BMGE

(BLOSUM30)

0.0462

0.0383

0.0427

BMGE

(BLOSUM62)

0.0444

0.0384

0.0859

BMGE

(BLOSUM95)

0.0448

0.0404

0.0935

Gblocks

(relaxed)

0.0445

0.0414

0.0584

trimAl

(strictplus)

0.0462

0.0445

0.0539

trimAl

(automated1)

0.0457

0.0436

0.0519

Noisy

 

0.0621

0.0437

0.0430

  1. For each column, the best (i.e. lower) distance is written in boldface characters. Average quartet distances that are not significantly different to this best value (as assessed by a sign test) are underscored.
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BMC Ecology and Evolution

ISSN: 2730-7182

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