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Table 3 Average quartet distances between the model trees and the BioNJ trees inferred from the different trimmed multiple sequence alignments

From: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

   Level of divergence
   ×1 ×2 ×3
initial   0.1500 0.2110 0.2441
BMGE (BLOSUM30) 0.0967 0.0669 0.0861
BMGE (BLOSUM62) 0.0646 0.0668 0.1073
BMGE (BLOSUM95) 0.0626 0.0651 0.1164
Gblocks (relaxed) 0.0569 0.0668 0.0988
trimAl (strictplus) 0.1027 0.1271 0.1798
trimAl (automated1) 0.1055 0.1293 0.1820
Noisy   0.0768 0.0892 0.1141
  1. For each column, the best (i.e. lower) distance is written in boldface characters. Average quartet distances that are not significantly different to this best value (as assessed by a sign test) are underscored.