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Table 5 Pseudogenes - First-order root distribution estimates

From: Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences

 

Root

X

Ï€ X|A

Ï€ X|C

Ï€ X|G

Ï€ X|T

A

0.3231

[0.3025; 0.3444]

0.1659

[0.1492; 0.1833]

0.2315

[0.2124; 0.2508]

0.2795

[0.2589; 0.3005]

C

0.3440

[0.3160; 0.3727]

0.2243

[0.2003; 0.2497]

0.0361

[0.0236; 0.0509]

0.3956

[0.3678; 0.4243]

G

0.3321

[0.3060; 0.3591]

0.1730

[0.1526; 0.1949]

0.2273

[0.2041; 0.2511]

0.2676

[0.2430; 0.2925]

T

0.2486

[0.2290; 0.2686]

0.1886

[0.1713; 0.2068]

0.2547

[0.2350; 0.2748]

0.3081

[0.2869; 0.3291]

  1. Estimates (mean and accompanying 95% credibility interval) for the sixteen sets of base frequencies at the ancestral root sequence under the context-dependent model with context-dependent model frequencies. The probabilities are grouped by the identity of the immediately preceding site.
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BMC Ecology and Evolution

ISSN: 2730-7182

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