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Table 1 Bootstrap scores comparison for the PheRS data set

From: Weighted bootstrapping: a correction method for assessing the robustness of phylogenetic trees

Branch number

Scores for noise-free data

Scores for noisy data (10% of noise)

 

Std

SB

LS

NSB

NLS

Std

SB

LS

NSB

NLS

1

35.7

35.7

35.4

35.7

35.2

33.0

33.0

32.6

32.8

32.4

2

100.0

100.0

100.0

100.0

100.0

99.7

99.7

99.7

99.7

99.7

3

54.1

54.3

53.7

55.3

53.4

43.4

43.6

43.0

44.9

42.8

4

100.0

100.0

100.0

100.0

100.0

99.9

99.9

99.9

100.0

99.9

5

91.7

91.9

91.8

92.8

91.7

78.6

79.2

78.7

81.7

78.7

6

47.2

47.4

47.6

48.7

47.9

34.2

34.6

34.6

36.6

34.8

7

54.4

54.7

54.4

56.3

54.5

43.8

44.2

43.8

45.9

43.8

8

22.8

22.7

22.7

22.5

22.7

20.5

20.5

20.4

20.8

20.3

9

100.0

100.0

100.0

100.0

100.0

100.0

100.0

100.0

100.0

100.0

10

100.0

100.0

100.0

100.0

100.0

99.8

99.8

99.8

99.8

99.8

11

98.9

98.9

99.0

99.0

99.0

95.3

95.4

95.5

96.0

95.6

12

99.9

99.9

99.9

99.9

99.9

97.1

97.2

97.0

97.5

97.0

13

68.2

68.3

68.8

69.1

69.2

56.6

56.9

57.6

58.4

58.3

14

99.8

99.8

99.8

99.9

99.9

98.6

98.7

98.7

98.9

98.7

15

23.6

23.9

23.5

25.4

23.5

15.7

16.0

15.8

17.3

16.0

16

45.3

45.6

45.5

47.0

45.6

32.1

32.4

32.4

33.7

32.4

17

5.1

5.1

5.0

5.2

5.0

2.4

2.5

2.5

2.8

2.5

18

66.3

66.8

67.0

68.9

67.4

50.5

51.2

51.0

54.6

51.4

19

63.2

63.2

63.5

63.3

63.7

54.7

54.9

55.0

55.5

55.3

20

5.5

5.5

5.6

5.6

5.7

2.7

2.7

2.7

2.8

2.7

21

26.1

26.2

26.1

26.9

26.2

19.9

20.1

20.0

21.0

20.0

22

2.2

2.2

2.2

2.2

2.3

1.2

1.2

1.2

1.3

1.3

23

33.2

33.5

32.9

34.7

32.7

21.5

21.8

21.2

23.2

21.1

24

21.4

21.5

21.2

22.2

21.2

10.7

10.8

10.6

11.6

10.7

25

100.0

100.0

100.0

100.0

100.0

99.8

99.8

99.7

99.8

99.7

26

69.0

69.2

69.4

70.0

69.5

50.2

50.5

50.4

51.9

50.6

27

77.0

77.3

76.9

78.9

77.0

64.5

64.9

64.5

66.9

64.6

28

31.1

31.1

31.0

31.1

30.9

17.8

17.9

17.8

18.6

17.9

29

49.1

49.1

49.3

49.0

49.3

33.4

33.5

33.5

34.1

33.6

  1. Comparison of bootstrap scores for the five bootstrapping strategies considered in this study. The comparison was made for all 32 internal branches of the phylogenetic trees inferred from the original (i.e., noise-free) and noisy (with 10% of noise added) PheRS sequences. The branch numbers correspond to those indicated in Figure 6. Standard bootstrap scores (Std), secondary bootstrap scores (SB), LS-based bootstrap scores (LS), normalized secondary bootstrap scores (NSB, shown in bold) and normalized LS-based bootstrap scores (NLS) are reported.