Skip to main content

Advertisement

Table 1 Summary of FOXI1 polymorphisms

From: African signatures of recent positive selection in human FOXI1

      Derived Allele Frequency  
Positiona dbSNP code Type of changeb Nucleotide changec Yoruban (2N = 40) European (2N = 40) Asian (2N = 40) FSTd
1 169465818 rs2277944 CS G/A 0.58 0.20 0.35 0.123
2 169466184 rs2277945 I T/C 0.23 0.28 0.43 0.026
3 169466367 rs2112669 I C/G 0.55 0.23 0.33 0.092
4 169466686 rs11951903 I T/C 0.05 0.00 0.25 0.162
5 169466751 rs4315934 I A/G 0.88 0.55 0.78 0.113
6 169466837 rs4315935 I A/G 0.88 0.55 0.78 0.113
7 169467111 rs2879269 I A/G 0.03 0.10 0.00 0.042
8 169467123 rs7380481 I T/C 0.23 0.28 0.43 0.026
9 169467572 rs77136537 I G/A 0.00 0.03 0.00 0.000
10 169468070 rs55685928 CS G/A 0.05 0.00 0.00 0.026
11 169468100 rs10063424 CS C/T 0.10 0.10 0.00 0.028
12 169468141 rs3828625 CNS A/G 0.00 0.00 0.03 0.000
13 169468312 rs6873124 UTR C/A 0.53 0.20 0.33 0.091
14 169468336 rs55762796 UTR A/T 0.05 0.08 0.03 -0.012
15 169468524 rs72828668 UTR G/C 0.00 0.00 0.03 0.000
16 169468633 rs6555887 UTR A/G 0.15 0.10 0.00 0.051
17 169468728 rs6555888 UTR A/G 0.83 0.70 0.95 0.082
18 169468749 rs77823283 UTR A/G 0.00 0.03 0.00 0.000
19 169468769   UTR T/A 0.00 0.03 0.00 0.000
20 169469034   UTR T/A 0.03 0.00 0.00 0.000
21 169469117 rs45466695 UTR C/T 0.000 0.08 0.00 0.051
22 169469123 rs3839285 UTR -/T 0.53 0.20 0.33 0.091
  1. aPositions are based on NCBI build 36.3
  2. bCNS stands for coding non-synonymous; CS, synonymous; I, intronic; and UTR, untranslated region
  3. cThe allele named first corresponds to the ancestral state for each SNP
  4. dOverall FST among Yorubans, Europeans and Asians