Table 1 Sample identification, geographic origin and ecogeographic unit [13], and associated haplotypes with their respective frequencies

Tapirus terrestris

TG01, TG06, TG29

French Guiana [1]

North Amazon

North-East Amazon rainforest

Hte 1

3/45

TG28

French Guiana [1]

North Amazon

North-East Amazon rainforest

Hte 2

2/45

TG5

French Guiana [1]

North Amazon

North-East Amazon rainforest

Hte 3

1/45

TG24

French Guiana [1]

North Amazon

North-East Amazon rainforest

Hte 7

1/45

TC54

East Colombia [2]

North Amazon

North-East Amazon rainforest

Hte 11

1/45

TC186

East Colombia [2]

North Amazon

North-East Amazon rainforest

Hte 19

1/45

TB01

Brazil, north [3]

North Amazon

North-East Amazon rainforest

Hte 14

1/45

TB02

Brazil, north [3]

North Amazon

North-East Amazon rainforest

Hte 15

1/45

TE17, TE22

Ecuador [4]

Andean Foothill

Upper Amazon rainforest

Hte 4

2/45

TE14

Ecuador [4]

Andean Foothill

Upper Amazon rainforest

Hte 5

1/45

TE19

Ecuador [4]

Andean Foothill

Upper Amazon rainforest

Hte 6

1/45

TE20

Ecuador [4]

Andean Foothill

Upper Amazon rainforest

Hte 8

1/45

TE16

Ecuador [4]

Andean Foothill

Upper Amazon rainforest

Hte 9

1/45

TP104

Peru, south-east [5]

West Amazon

Upper Amazon rainforest

Hte 12

1/45

TP94

Peru, south-east [5]

West Amazon

Upper Amazon rainforest

Hte 16

1/45

TP14

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 13

2/45

TP4

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 23

1/45

TP12, TP13

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 24

2/45

TP11

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 25

1/45

TP9

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 26

1/45

TP6, TP7

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 27

2/45

TP5, TP2

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 28

2/45

TP3

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 29

1/45

TP1

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 30

1/45

TP10

Peru, east [6]

Andean Foothill

Upper Amazon rainforest

Hte 31

1/45

TC88

Colombia/Brazil frontier [7]

West Amazon

Upper Amazon rainforest

Hte 18

1/45

TC68

Colombia/Brazil frontier [7]

West Amazon

Upper Amazon rainforest

Hte 20

1/45

TB69

Colombia/Brazil frontier [7]

West Amazon

Upper Amazon rainforest

Hte 13

2/45

TV95, TV48, TV46

Venezuela [8]

North Amazon

Llanos

Hte 10

3/45

TBo183

Bolivia [9]

South Amazon

"Pastizal" herbaceous habitat

Hte 2

2/45

TBo85

Bolivia [9]

South Amazon

"Pastizal" herbaceous habitat

Hte 22

1/45

TC100

Colombia, west [10]

West Amazon

Choco Darien rainforest

Hte 17

1/45

TB29

Brazil, south of the Amazon mouth [11]

South Amazon

South East Amazon rainforest

Hte 21

1/45

TA10

Argentina [12]

South Amazon

Dry tropical forest

Hte 32

1/45

TA11

Argentina [12]

South Amazon

Dry tropical forest

Hte 33

1/45

TA12

Argentina [12]

South Amazon

Dry tropical forest

Hte 34

1/45

TA13

Argentina [12]

South Amazon

Dry tropical forest

Hte 35

1/45

Tapirus pinchaque

TPI1, TPI2

Colombia [T. pi]

Hpi 1

2/3

TPI4

Colombia [T. pi]

Hpi 2

1/3