TY - JOUR AU - Swanson, W. J. AU - Vacquier, V. D. PY - 2002 DA - 2002// TI - The rapid evolution of reproductive proteins JO - Nature Reviews Genetics VL - 3 UR - https://doi.org/10.1038/nrg733 DO - 10.1038/nrg733 ID - Swanson2002 ER - TY - JOUR AU - Gerrard, D. T. AU - Meyer, A. PY - 2007 DA - 2007// TI - Positive selection and gene conversion in SPP120, a fertilization-related gene, during the east african cichlid fish radiation JO - Molecular Biology and Evolution VL - 24 UR - https://doi.org/10.1093/molbev/msm159 DO - 10.1093/molbev/msm159 ID - Gerrard2007 ER - TY - JOUR AU - Swanson, W. J. AU - Wong, A. AU - Wolfner, M. F. AU - Aquadro, C. F. PY - 2004 DA - 2004// TI - Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection JO - Genetics VL - 168 UR - https://doi.org/10.1534/genetics.104.030478 DO - 10.1534/genetics.104.030478 ID - Swanson2004 ER - TY - JOUR AU - Clark, N. L. AU - Swanson, W. J. PY - 2005 DA - 2005// TI - Pervasive adaptive evolution in primate seminal proteins JO - PLoS Genet VL - 1 UR - https://doi.org/10.1371/journal.pgen.0010035 DO - 10.1371/journal.pgen.0010035 ID - Clark2005 ER - TY - JOUR AU - Kulathinal, R. J. AU - Skwarek, L. AU - Morton, R. A. AU - Singh, R. S. PY - 2003 DA - 2003// TI - Rapid evolution of the sex-determining gene, transformer: Structural diversity and rate heterogeneity among sibling species of Drosophila JO - Molecular Biology and Evolution VL - 20 UR - https://doi.org/10.1093/molbev/msg053 DO - 10.1093/molbev/msg053 ID - Kulathinal2003 ER - TY - JOUR AU - Gailey, D. A. AU - Billeter, J. C. AU - Liu, J. H. AU - Bauzon, F. AU - Allendorfer, J. B. AU - Goodwin, S. F. PY - 2006 DA - 2006// TI - Functional conservation of the fruitless male sex-determination gene across 250 Myr of insect evolution JO - Molecular Biology and Evolution VL - 23 UR - https://doi.org/10.1093/molbev/msj070 DO - 10.1093/molbev/msj070 ID - Gailey2006 ER - TY - JOUR AU - Andrés, J. A. AU - Maroja, L. S. AU - Harrison, R. G. PY - 2008 DA - 2008// TI - Searching for candidate speciation genes using a proteomic approach: seminal proteins in field crickets JO - Proceedings of the Royal Society B: Biological Sciences VL - 275 UR - https://doi.org/10.1098/rspb.2008.0423 DO - 10.1098/rspb.2008.0423 ID - Andrés2008 ER - TY - JOUR AU - Orr, H. A. AU - Masly, J. P. AU - Presgraves, D. C. PY - 2004 DA - 2004// TI - Speciation genes JO - Current Opinion in Genetics & Development VL - 14 UR - https://doi.org/10.1016/j.gde.2004.08.009 DO - 10.1016/j.gde.2004.08.009 ID - Orr2004 ER - TY - JOUR AU - Cho, S. AU - Huang, Z. Y. AU - Zhang, J. PY - 2007 DA - 2007// TI - Sex-specific splicing of the honeybee doublesex gene reveals 300 Million years of evolution at the bottom of the insect sex-determination pathway JO - Genetics VL - 177 UR - https://doi.org/10.1534/genetics.107.078980 DO - 10.1534/genetics.107.078980 ID - Cho2007 ER - TY - JOUR AU - Pane, A. AU - De Simone, A. AU - Saccone, G. AU - Polito, C. PY - 2005 DA - 2005// TI - Evolutionary conservation of Ceratitis capitata transformer gene function JO - Genetics VL - 171 UR - https://doi.org/10.1534/genetics.105.041004 DO - 10.1534/genetics.105.041004 ID - Pane2005 ER - TY - JOUR AU - Schütt, C. AU - Nöthiger, R. PY - 2000 DA - 2000// TI - Structure, function and evolution of sex-determining systems in Dipteran insects JO - Development VL - 127 ID - Schütt2000 ER - TY - JOUR AU - Demir, E. AU - Dickson, B. J. PY - 2005 DA - 2005// TI - fruitless splicing specifies male courtship behavior in Drosophila JO - Cell VL - 121 UR - https://doi.org/10.1016/j.cell.2005.04.027 DO - 10.1016/j.cell.2005.04.027 ID - Demir2005 ER - TY - JOUR AU - Kyriacou, C. P. PY - 2005 DA - 2005// TI - Sex in fruitflies is fruitless JO - Nature VL - 436 UR - https://doi.org/10.1038/436334a DO - 10.1038/436334a ID - Kyriacou2005 ER - TY - JOUR AU - Kimura, K. i. AU - Hachiya, T. AU - Koganezawa, M. AU - Tazawa, T. AU - Yamamoto, D. PY - 2008 DA - 2008// TI - Fruitless and doublesex coordinate to generate male-specific neurons that can initiate courtship JO - Neuron VL - 59 UR - https://doi.org/10.1016/j.neuron.2008.06.007 DO - 10.1016/j.neuron.2008.06.007 ID - Kimura2008 ER - TY - JOUR AU - Rideout, E. J. AU - Dornan, A. J. AU - Neville, M. C. AU - Eadie, S. AU - Goodwin, S. F. PY - 2010 DA - 2010// TI - Control of sexual differentiation and behavior by the doublesex gene in Drosophila melanogaster JO - Nature Neuroscience VL - 13 UR - https://doi.org/10.1038/nn.2515 DO - 10.1038/nn.2515 ID - Rideout2010 ER - TY - JOUR AU - Bertossa, R. C. AU - van de Zande, L. AU - Beukeboom, L. W. PY - 2009 DA - 2009// TI - The fruitless gene in Nasonia displays complex sex-specific splicing and contains new zinc finger domains JO - Molecular Biology and Evolution VL - 26 UR - https://doi.org/10.1093/molbev/msp067 DO - 10.1093/molbev/msp067 ID - Bertossa2009 ER - TY - JOUR AU - Usui-Aoki, K. AU - Ito, H. AU - Ui-Tei, K. AU - Takahashi, K. AU - Lukacsovich, T. AU - Awano, W. AU - Nakata, H. AU - Piao, Z. F. AU - Nilsson, E. E. AU - Tomida, J. y. PY - 2000 DA - 2000// TI - Formation of the male-specific muscle in female Drosophila by ectopic fruitless expression JO - Nat Cell Biol VL - 2 UR - https://doi.org/10.1038/35019537 DO - 10.1038/35019537 ID - Usui-Aoki2000 ER - TY - JOUR AU - Song, H. J. AU - Billeter, J. C. AU - Reynaud, E. AU - Carlo, T. AU - Spana, E. P. AU - Perrimon, N. AU - Goodwin, S. F. AU - Baker, B. S. AU - Taylor, B. J. PY - 2002 DA - 2002// TI - The fruitless gene is required for the proper formation of axonal tracts in the embryonic central nervous system of Drosophila JO - Genetics VL - 162 ID - Song2002 ER - TY - JOUR AU - Anand, A. AU - Villella, A. AU - Ryner, L. C. AU - Carlo, T. AU - Goodwin, S. F. AU - Song, H. J. AU - Gailey, D. A. AU - Morales, A. AU - Hall, J. C. AU - Baker, B. S. PY - 2001 DA - 2001// TI - Molecular genetic dissection of the sex-specific and vital functions of the Drosophila melanogaster sex determination gene fruitless JO - Genetics VL - 158 ID - Anand2001 ER - TY - CHAP AU - Malavasi, A. ED - Malavasi, A. ED - Zucchi, R. A. PY - 2000 DA - 2000// TI - Biogeografia BT - Moscas-das-frutas de importância econômica no Brasil - Conhecimento básico e aplicado PB - Holos Editora CY - Ribeirão Preto, SP ID - Malavasi2000 ER - TY - JOUR AU - Araujo, E. L. AU - Zucchi, R. A. PY - 2006 DA - 2006// TI - Medidas do acúleo na caracterização de cinco espécies de Anastrepha do grupo fraterculus (Diptera: Tephritidae) JO - Neotropical Entomology VL - 35 UR - https://doi.org/10.1590/S1519-566X2006000300006 DO - 10.1590/S1519-566X2006000300006 ID - Araujo2006 ER - TY - JOUR AU - Selivon, D. AU - Perondini, A. L. P. AU - Morgante, J. S. PY - 2005 DA - 2005// TI - A genetic-morphological characterization of two cryptic species of the Anastrepha fraterculus complex (Diptera: Tephritidae) JO - Annals of the Entomological Society of America VL - 98 UR - https://doi.org/10.1603/0013-8746(2005)098[0367:AGCOTC]2.0.CO;2 DO - 10.1603/0013-8746(2005)098[0367:AGCOTC]2.0.CO;2 ID - Selivon2005 ER - TY - JOUR AU - Smith-Caldas, M. R. B. AU - Mcpheron, B. A. AU - Silva, J. G. AU - Zucchi, R. A. PY - 2001 DA - 2001// TI - Phylogenetic relationships among species of the fraterculus group (Anastrepha: Diptera: Tephritidae) inferred from DNA sequences of mitochondrial cytochrome oxidase I JO - Neotropical Entomology VL - 30 UR - https://doi.org/10.1590/S1519-566X2001000400009 DO - 10.1590/S1519-566X2001000400009 ID - Smith-Caldas2001 ER - TY - JOUR AU - Ruiz, M. F. AU - Stefani, R. N. AU - Mascarenhas, R. O. AU - Perondini, A. L. P. AU - Selivon, D. AU - Sanchez, L. PY - 2005 DA - 2005// TI - The gene doublesex of the fruit fly Anastrepha obliqua (Diptera, Tephritidae) JO - Genetics VL - 171 UR - https://doi.org/10.1534/genetics.105.044925 DO - 10.1534/genetics.105.044925 ID - Ruiz2005 ER - TY - JOUR AU - Ruiz, M. F. AU - Milano, A. AU - Salvemini, M. AU - Eirín-López, J. M. AU - Perondini, A. L. P. AU - Selivon, D. AU - Polito, C. AU - Saccone, G. AU - Sánchez, L. PY - 2007 DA - 2007// TI - The gene transformer of Anastrepha fruit flies (Diptera, Tephritidae) and its evolution in insects JO - PLoS ONE VL - 2 UR - https://doi.org/10.1371/journal.pone.0001239 DO - 10.1371/journal.pone.0001239 ID - Ruiz2007 ER - TY - JOUR AU - Yang, Z. AU - Swanson, W. J. PY - 2002 DA - 2002// TI - Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes JO - Molecular Biology and Evolution VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003981 DO - 10.1093/oxfordjournals.molbev.a003981 ID - Yang2002 ER - TY - JOUR AU - Kosakovsky Pond, S. L. AU - Poon, A. F. Y. AU - Leigh Brown, A. J. AU - Frost, S. D. W. PY - 2008 DA - 2008// TI - A Maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus JO - Molecular Biology and Evolution VL - 25 UR - https://doi.org/10.1093/molbev/msn123 DO - 10.1093/molbev/msn123 ID - Kosakovsky Pond2008 ER - TY - JOUR AU - Yang, Z. AU - Wong, W. S. W. AU - Nielsen, R. PY - 2005 DA - 2005// TI - Bayes empirical Bayes inference of amino acid sites under positive selection JO - Molecular Biology and Evolution VL - 22 UR - https://doi.org/10.1093/molbev/msi097 DO - 10.1093/molbev/msi097 ID - Yang2005 ER - TY - JOUR AU - Kryazhimskiy, S. AU - Plotkin, J. B. PY - 2008 DA - 2008// TI - The population genetics of dN/dS JO - PLoS Genet VL - 4 UR - https://doi.org/10.1371/journal.pgen.1000304 DO - 10.1371/journal.pgen.1000304 ID - Kryazhimskiy2008 ER - TY - JOUR AU - Tajima, F. PY - 1989 DA - 1989// TI - The effect of change in population size on DNA polymorphism JO - Genetics VL - 123 ID - Tajima1989 ER - TY - JOUR AU - Fu, Y. -. X. AU - Li, W. -. H. PY - 1993 DA - 1993// TI - Statistical tests of neutrality of mutations JO - Genetics VL - 133 ID - Fu1993 ER - TY - JOUR AU - Fay, J. C. AU - Wu, C. -. I. PY - 2000 DA - 2000// TI - Hitchhiking under positive darwinian selection JO - Genetics VL - 155 ID - Fay2000 ER - TY - JOUR AU - Achaz, G. PY - 2009 DA - 2009// TI - Frequency spectrum neutrality tests: One for all and all for one JO - Genetics VL - 183 UR - https://doi.org/10.1534/genetics.109.104042 DO - 10.1534/genetics.109.104042 ID - Achaz2009 ER - TY - JOUR AU - Fu, Y. X. PY - 1997 DA - 1997// TI - Statistical Tests of Neutrality of Mutations Against Population Growth, Hitchhiking and Background Selection JO - Genetics VL - 147 ID - Fu1997 ER - TY - JOUR AU - Depaulis, F. AU - Veuille, M. PY - 1998 DA - 1998// TI - Neutrality tests based on the distribution of haplotypes under an infinite-site model JO - Molecular Biology and Evolution VL - 15 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025905 DO - 10.1093/oxfordjournals.molbev.a025905 ID - Depaulis1998 ER - TY - JOUR AU - McDonald, J. H. AU - Kreitman, M. PY - 1991 DA - 1991// TI - Adaptive protein evolution at the Adh locus in Drosophila JO - Nature VL - 351 UR - https://doi.org/10.1038/351652a0 DO - 10.1038/351652a0 ID - McDonald1991 ER - TY - JOUR AU - Templeton, A. R. PY - 1996 DA - 1996// TI - Contingency tests of neutrality using intra/interspecific gene trees: The rejection of neutrality for the evolution of the mitochondrial cytochrome oxidase II gene in the hominoid primates JO - Genetics VL - 144 ID - Templeton1996 ER - TY - JOUR AU - Billeter, J. C. AU - Villella, A. AU - Allendorfer, J. B. AU - Dornan, A. J. AU - Richardson, M. AU - Gailey, D. A. AU - Goodwin, S. F. PY - 2006 DA - 2006// TI - Isoform-specific control of male neuronal bifferentiation and behavior in Drosophila by the fruitless gene JO - Current Biology VL - 16 UR - https://doi.org/10.1016/j.cub.2006.04.039 DO - 10.1016/j.cub.2006.04.039 ID - Billeter2006 ER - TY - JOUR AU - Clyne, J. D. AU - Miesenböck, G. PY - 2008 DA - 2008// TI - Sex-specific control and tuning of the pattern generator for courtship song in Drosophila JO - Cell VL - 133 UR - https://doi.org/10.1016/j.cell.2008.01.050 DO - 10.1016/j.cell.2008.01.050 ID - Clyne2008 ER - TY - JOUR AU - Kurtovic, A. AU - Widmer, A. AU - Dickson, B. J. PY - 2007 DA - 2007// TI - A single class of olfactory neurons mediates behavioural responses to a Drosophila sex pheromone JO - Nature VL - 446 UR - https://doi.org/10.1038/nature05672 DO - 10.1038/nature05672 ID - Kurtovic2007 ER - TY - JOUR AU - Häsemeyer, M. AU - Yapici, N. AU - Heberlein, U. AU - Dickson, B. J. PY - 2009 DA - 2009// TI - Sensory neurons in the Drosophila genital tract regulate female reproductive behavior JO - Neuron VL - 61 UR - https://doi.org/10.1016/j.neuron.2009.01.009 DO - 10.1016/j.neuron.2009.01.009 ID - Häsemeyer2009 ER - TY - JOUR AU - Monteiro, A. AU - Podlaha, O. PY - 2009 DA - 2009// TI - Wings, Horns, and Butterfly Eyespots: How Do Complex Traits Evolve? JO - PLoS Biol VL - 7 UR - https://doi.org/10.1371/journal.pbio.1000037 DO - 10.1371/journal.pbio.1000037 ID - Monteiro2009 ER - TY - JOUR AU - Panganiban, G. AU - Nagy, L. AU - Carroll, S. B. PY - 1994 DA - 1994// TI - The role of the Distal-less gene in the development and evolution of insect limbs JO - Current Biology VL - 4 UR - https://doi.org/10.1016/S0960-9822(00)00151-2 DO - 10.1016/S0960-9822(00)00151-2 ID - Panganiban1994 ER - TY - JOUR AU - Monteiro, A. AU - Glaser, G. AU - Stockslager, S. AU - Glansdorp, N. AU - Ramos, D. PY - 2006 DA - 2006// TI - Comparative insights into questions of lepidopteran wing pattern homology JO - BMC Developmental Biology VL - 6 UR - https://doi.org/10.1186/1471-213X-6-52 DO - 10.1186/1471-213X-6-52 ID - Monteiro2006 ER - TY - JOUR AU - Porter, M. L. AU - Cronin, T. W. AU - McClellan, D. A. AU - Crandall, K. A. PY - 2007 DA - 2007// TI - Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins JO - Molecular Biology and Evolution VL - 24 UR - https://doi.org/10.1093/molbev/msl152 DO - 10.1093/molbev/msl152 ID - Porter2007 ER - TY - JOUR AU - McClellan, D. A. AU - Palfreyman, E. J. AU - Smith, M. J. AU - Moss, J. L. AU - Christensen, R. G. AU - Sailsbery, J. K. PY - 2005 DA - 2005// TI - Physicochemical evolution and molecular adaptation of the cetacean and artiodactyl cytochrome b proteins JO - Molecular Biology and Evolution VL - 22 UR - https://doi.org/10.1093/molbev/msi028 DO - 10.1093/molbev/msi028 ID - McClellan2005 ER - TY - JOUR AU - Nickel, G. C. AU - Tefft, D. L. AU - Goglin, K. AU - Adams, M. D. PY - 2008 DA - 2008// TI - An empirical test for branch-specific positive selection JO - Genetics VL - 179 UR - https://doi.org/10.1534/genetics.108.090548 DO - 10.1534/genetics.108.090548 ID - Nickel2008 ER - TY - JOUR AU - Castelloe, J. AU - Templeton, A. R. PY - 1994 DA - 1994// TI - Root probabilities for intraspecific gene trees under neutral coalescent theory JO - Molecular Phylogenetics and Evolution VL - 3 UR - https://doi.org/10.1006/mpev.1994.1013 DO - 10.1006/mpev.1994.1013 ID - Castelloe1994 ER - TY - JOUR AU - Donnelly, P. AU - Tavare, S. PY - 1986 DA - 1986// TI - The ages of alleles and a coalescent JO - Advances in Applied Probability VL - 18 UR - https://doi.org/10.2307/1427237 DO - 10.2307/1427237 ID - Donnelly1986 ER - TY - JOUR AU - Hudson, R. R. PY - 1990 DA - 1990// TI - Gene genealogies and the coalescent process JO - Oxford Surveys in Evolutionary Biology VL - 7 ID - Hudson1990 ER - TY - JOUR AU - Zeng, K. AU - Mano, S. AU - Shi, S. AU - Wu, C. -. I. PY - 2007 DA - 2007// TI - Comparisons of site- and haplotype-frequency methods for detecting positive selection JO - Molecular Biology and Evolution VL - 24 UR - https://doi.org/10.1093/molbev/msm078 DO - 10.1093/molbev/msm078 ID - Zeng2007 ER - TY - JOUR AU - McAllister, B. F. AU - McVean, G. A. T. PY - 2000 DA - 2000// TI - Neutral evolution of the sex-determining gene transformer in Drosophila JO - Genetics VL - 154 ID - McAllister2000 ER - TY - BOOK AU - Templeton, A. R. PY - 2006 DA - 2006// TI - Population genetics and microevolutionary theory PB - John Wiley and Sons, Inc. CY - Hoboken UR - https://doi.org/10.1002/0470047356 DO - 10.1002/0470047356 ID - Templeton2006 ER - TY - CHAP AU - Fay, J. C. AU - Wu, C. -. I. ED - Nurminsky, D. PY - 2005 DA - 2005// TI - Detecting hitchhiking from patterns of DNA polymorphism BT - Selective Sweep PB - Eurekah.com and Kluwer Academic/Plenum Publishers CY - New York and Gerogetown UR - https://doi.org/10.1007/0-387-27651-3_6 DO - 10.1007/0-387-27651-3_6 ID - Fay2005 ER - TY - JOUR AU - Chevin, L. M. AU - Billiard, S. AU - Hospital, F. PY - 2008 DA - 2008// TI - Hitchhiking both ways: Effect of two interfering selective sweeps on linked neutral variation JO - Genetics VL - 180 UR - https://doi.org/10.1534/genetics.108.089706 DO - 10.1534/genetics.108.089706 ID - Chevin2008 ER - TY - JOUR AU - Maddison, W. P. PY - 1997 DA - 1997// TI - Gene trees in species trees JO - Systematic Biology VL - 46 UR - https://doi.org/10.1093/sysbio/46.3.523 DO - 10.1093/sysbio/46.3.523 ID - Maddison1997 ER - TY - JOUR AU - Hudson, R. R. AU - Coyne, J. A. AU - Huelsenbeck, J. PY - 2002 DA - 2002// TI - Mathematical consequences of the genealogical species concept JO - Evolution VL - 56 UR - https://doi.org/10.1111/j.0014-3820.2002.tb01467.x DO - 10.1111/j.0014-3820.2002.tb01467.x ID - Hudson2002 ER - TY - JOUR AU - Tajima, F. PY - 1983 DA - 1983// TI - Evolutionary relationship of DNA sequences in finite populations JO - Genetics VL - 105 ID - Tajima1983 ER - TY - JOUR AU - Morgante, J. S. AU - Malavasi, A. AU - Bush, G. L. PY - 1980 DA - 1980// TI - Biochemical systematics and evolutionary relationships of neotropical Anastrepha JO - Annals of the Entomological Society of America (USA) VL - 73 UR - https://doi.org/10.1093/aesa/73.6.622 DO - 10.1093/aesa/73.6.622 ID - Morgante1980 ER - TY - JOUR AU - Ruiz, M. F. AU - Eirín-López, J. M. AU - Stefani, R. N. AU - Perondini, A. L. P. AU - Selivon, D. AU - Sánchez, L. PY - 2007 DA - 2007// TI - The gene doublesex of Anastrepha fruit flies (Diptera, Tephritidae) and its evolution in insects JO - Development Genes and Evolution VL - 217 UR - https://doi.org/10.1007/s00427-007-0178-8 DO - 10.1007/s00427-007-0178-8 ID - Ruiz2007 ER - TY - JOUR AU - Ting, C. T. AU - Tsaur, S. C. AU - Wu, C. I. PY - 2000 DA - 2000// TI - The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus JO - Proceedings of the National Academy of Sciences of the United States of America VL - 97 UR - https://doi.org/10.1073/pnas.090541597 DO - 10.1073/pnas.090541597 ID - Ting2000 ER - TY - JOUR AU - Dopman, E. B. AU - Pérez, L. AU - Bogdanowicz, S. M. AU - Harrison, R. G. PY - 2005 DA - 2005// TI - Consequences of reproductive barriers for genealogical discordance in the European corn borer JO - Proceedings of the National Academy of Sciences of the United States of America VL - 102 UR - https://doi.org/10.1073/pnas.0502054102 DO - 10.1073/pnas.0502054102 ID - Dopman2005 ER - TY - JOUR AU - Maroja, L. S. AU - Andrés, J. A. AU - Harrison, R. G. PY - 2009 DA - 2009// TI - Genealogical discordance and patterns of introgression and selection across a cricket hybrid zone JO - Evolution VL - 63 UR - https://doi.org/10.1111/j.1558-5646.2009.00767.x DO - 10.1111/j.1558-5646.2009.00767.x ID - Maroja2009 ER - TY - JOUR AU - Chomczynski, P. AU - Sacchi, N. PY - 1987 DA - 1987// TI - Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction JO - Analytical Biochemistry VL - 162 UR - https://doi.org/10.1016/0003-2697(87)90021-2 DO - 10.1016/0003-2697(87)90021-2 ID - Chomczynski1987 ER - TY - JOUR AU - Cline, J. AU - Braman, J. C. AU - Hogrefe, H. H. PY - 1996 DA - 1996// TI - PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases JO - Nucl Acids Res VL - 24 UR - https://doi.org/10.1093/nar/24.18.3546 DO - 10.1093/nar/24.18.3546 ID - Cline1996 ER - TY - JOUR AU - Lis, J. T. AU - Schleif, R. PY - 1975 DA - 1975// TI - Size fractionation of double-stranded DNA by precipitation with polyethylene glycol JO - Nucl Acids Res VL - 2 UR - https://doi.org/10.1093/nar/2.3.383 DO - 10.1093/nar/2.3.383 ID - Lis1975 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT JO - Nucleic Acids Symposium Series VL - 41 ID - Hall1999 ER - TY - JOUR AU - Posada, D. AU - Crandall, K. A. PY - 1998 DA - 1998// TI - MODELTEST: testing the model of DNA substitution JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.9.817 DO - 10.1093/bioinformatics/14.9.817 ID - Posada1998 ER - TY - JOUR AU - Pond, S. L. K. AU - Frost, S. D. W. AU - Muse, S. V. PY - 2005 DA - 2005// TI - HyPhy: hypothesis testing using phylogenies JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti079 DO - 10.1093/bioinformatics/bti079 ID - Pond2005 ER - TY - JOUR AU - Guindon, S. AU - Gascuel, O. PY - 2003 DA - 2003// TI - A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood JO - Systematic Biology VL - 52 UR - https://doi.org/10.1080/10635150390235520 DO - 10.1080/10635150390235520 ID - Guindon2003 ER - TY - JOUR AU - Zhang, J. AU - Nielsen, R. AU - Yang, Z. PY - 2005 DA - 2005// TI - Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level JO - Molecular Biology and Evolution VL - 22 UR - https://doi.org/10.1093/molbev/msi237 DO - 10.1093/molbev/msi237 ID - Zhang2005 ER - TY - JOUR AU - Yang, Z. AU - Nielsen, R. PY - 2002 DA - 2002// TI - Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages JO - Molecular Biology and Evolution VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004148 DO - 10.1093/oxfordjournals.molbev.a004148 ID - Yang2002 ER - TY - JOUR AU - Yang, Z. PY - 2007 DA - 2007// TI - PAML 4: Phylogenetic analysis by maximum likelihood JO - Molecular Biology and Evolution VL - 24 UR - https://doi.org/10.1093/molbev/msm088 DO - 10.1093/molbev/msm088 ID - Yang2007 ER - TY - JOUR AU - Woolley, S. AU - Johnson, J. AU - Smith, M. J. AU - Crandall, K. A. AU - McClellan, D. A. PY - 2003 DA - 2003// TI - TreeSAAP: Selection on amino acid properties using phylogenetic trees JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg043 DO - 10.1093/bioinformatics/btg043 ID - Woolley2003 ER - TY - JOUR AU - McClellan, D. A. AU - McCracken, K. G. PY - 2001 DA - 2001// TI - Estimating the influence of selection on the variable amino acid sites of the cytochrome b protein functional domains JO - Molecular Biology and Evolution VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003892 DO - 10.1093/oxfordjournals.molbev.a003892 ID - McClellan2001 ER - TY - BOOK AU - Nei, M. PY - 1987 DA - 1987// TI - Molecular Evolutionary Genetics PB - Columbia Univ. Press CY - New York ID - Nei1987 ER - TY - JOUR AU - Librado, P. AU - Rozas, J. PY - 2009 DA - 2009// TI - DnaSP v5: a software for comprehensive analysis of DNA polymorphism data JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp187 DO - 10.1093/bioinformatics/btp187 ID - Librado2009 ER - TY - CHAP AU - Sheskin, D. J. PY - 2004 DA - 2004// TI - Inferential statistical tests employed with two independent samples (and related measures of association/correlation) BT - Handbook of parametric and nonparametric statistical procedures PB - Chapman and Hall/CRC CY - Boca Raton, Florida - USA ID - Sheskin2004 ER - TY - JOUR AU - Clement, M. AU - Posada, D. AU - Crandall, K. A. PY - 2000 DA - 2000// TI - TCS: a computer program to estimate gene genealogies JO - Molecular Ecology VL - 9 UR - https://doi.org/10.1046/j.1365-294x.2000.01020.x DO - 10.1046/j.1365-294x.2000.01020.x ID - Clement2000 ER - TY - JOUR AU - Templeton, A. R. AU - Crandall, K. A. AU - Sing, C. F. PY - 1992 DA - 1992// TI - A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. cladogram estimation JO - Genetics VL - 132 ID - Templeton1992 ER - TY - JOUR AU - Sawyer, S. PY - 1989 DA - 1989// TI - Statistical tests for detecting gene conversion JO - Molecular Biology and Evolution VL - 6 ID - Sawyer1989 ER - TY - JOUR AU - Martin, D. AU - Rybicki, E. PY - 2000 DA - 2000// TI - RDP: Detection of recombination amongst aligned sequences JO - Bioinformatics VL - 16 UR - https://doi.org/10.1093/bioinformatics/16.6.562 DO - 10.1093/bioinformatics/16.6.562 ID - Martin2000 ER - TY - JOUR AU - Yang, Z. PY - 2002 DA - 2002// TI - Inference of selection from multiple species alignments JO - Current Opinion in Genetics & Development VL - 12 UR - https://doi.org/10.1016/S0959-437X(02)00348-9 DO - 10.1016/S0959-437X(02)00348-9 ID - Yang2002 ER - TY - JOUR AU - Hodges, J. L. AU - Ramsey, P. H. AU - Wechsler, S. PY - 1990 DA - 1990// TI - Improved significance probabilities of the Wilcoxon test JO - Journal of Educational Statistics VL - 15 UR - https://doi.org/10.2307/1165034 DO - 10.2307/1165034 ID - Hodges1990 ER -