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Table 1 List of species, authorities, location of collections and GenBank Accession numbers used in the phylogenetic analyses for both 16S mtDNA and the 28S rDNA

From: The evolution of euhermaphroditism in caridean shrimps: a molecular perspective of sexual systems and systematics

16S Tree Identifier Scientific Name Authority Location 16S 28S Sexual System Social System
Family Hippolytidae Bate, 1888      
  Short branch       
1 Lysmata bahia Rhyne and Lin, 2006 Salvador, Brazil HQ315557 - PSH Group
1 Lysmata bahia Rhyne and Lin, 2006 Salvador, Brazil HQ315558 -   
2 Lysmata bahia Rhyne and Lin, 2006 Bocas Del Toro, Panama EU861503 -   
3 Lysmata ankeri Rhyne and Lin, 2006 Haiti HQ315597 (2) - PSH Group
3 Lysmata ankeri Rhyne and Lin, 2006 SMEE (Haiti) EU861501 -   
3 Lysmata ankeri Rhyne and Lin, 2006 Haiti HQ315598 -   
4 Lysmata ankeri Rhyne and Lin, 2006 Bahia, Brazil HQ315599 -   
4 Lysmata ankeri Rhyne and Lin, 2006 Bahia, Brazil HQ315600 (2) -   
5 Lysmata pederseni Rhyne and Lin, 2006 Florida Keys, FL, USA EU135832 - PSH Pair?/Low
6 Lysmata pederseni Rhyne and Lin, 2006 Carrie Bow, Belize EU861504 -   
7 Lysmata pederseni Rhyne and Lin, 2006 Florida Keys, FL, USA HQ315601 -   
8 Lysmata pederseni Rhyne and Lin, 2006 Florida Keys, FL, USA HQ315602 -   
9 Lysmata boggessi Rhyne and Lin, 2006 Hernando Beach, FL, USA HQ315603 (2) - PSH Group
9 Lysmata boggessi Rhyne and Lin, 2006 St. Petersburg, FL, USA EU861505 -   
9 Lysmata boggessi Rhyne and Lin, 2006 Unknown DQ079719 DQ079794   
10 Lysmata rafa Rhyne and Anker, 2008 Florida Keys, FL, USA HQ315604 - PSH Pair?/Low
11 Lysmata rafa Rhyne and Anker, 2008 Aquarium store, FL, USA (Haiti) EU861495 -   
12 Lysmata wurdemanni (Gibbes, 1850) St. Petersburg, FL, USA EU861497 - PSH Group
12 Lysmata wurdemanni (Gibbes, 1850) Florida Keys, FL, USA EU135811 -   
12 Lysmata wurdemanni (Gibbes, 1850) Port Aransas, TX, USA EU861496 -   
12 Lysmata wurdemanni (Gibbes, 1850) Florida Keys, FL, USA HQ315605 HQ315624   
13 Lysmata wurdemanni (Gibbes, 1850) Fort Pierce, FL, USA EU861500 -   
13 Lysmata wurdemanni (Gibbes, 1850) Sebastian Inlet, FL, USA EU135831 -   
14 Lysmata wurdemanni (Gibbes, 1850) Port Aransas, TX, USA EU135796 -   
15 Lysmata gracilirostris Wicksten 2000 Venao, Panama (Pacific) EU861502 - PSH? ?
16 Lysmata nayaritensis Wicksten 2000 Chumical, Panama EU861506 - PSH Group
17 Lysmata amboinensis (De Man, 1888) Bali HQ315589 (2) HQ315622 PSH Pair/Low
17 Lysmata amboinensis (De Man, 1888) Philippines EU861488 -   
18 Lysmata amboinensis (De Man, 1888) Java EU861487 -   
19 Lysmata grabhami (Gordon, 1935) Florida, USA HQ315590 HQ315621 PSH Pair/Low
19 Lysmata grabhami (Gordon, 1935) Brazil HQ315591 -   
19 Lysmata grabhami (Gordon, 1935) Florida, USA HQ315592 -   
19 Lysmata grabhami (Gordon, 1935) Haiti EU861489 -   
20 Lysmata grabhami (Gordon, 1935) Brazil HQ315593 -   
21 Lysmata grabhami (Gordon, 1935) Madeira, Portugal EU861490 -   
22 Lysmata debelius Bruce, 1983 Indo-Pacific HQ315594 (2) - PSH Pair/Low
22 Lysmata debelius Bruce, 1983 Sri Lanka HQ315595 -   
22 Lysmata debelius Bruce, 1983 Philippines EU861492 -   
22 Lysmata debelius Bruce, 1983 Indo-Pacific EU861491 -   
22 Lysmata debelius Bruce, 1983 Unknown DQ079718 DQ079793   
23 Lysmata debelius Bruce, 1983 Java EU861493 -   
24 Lysmata californica (Stimpson, 1866) La Jolla, CA, USA HQ315596 (2) - PSH Group
24 Lysmata californica (Stimpson, 1866) La Jolla, CA, USA EU861498 -   
25 Lysmata olavoi Fransen, 1991 Azores, Portugal EU861494 - PSH? ?
  Long branch       
26 Lysmata cf. acicula † (Rathbun, 1906) Lahi lahi Point, Oahu, HI, USA HQ315575 - PSH Group
27 Lysmata cf. trisetacea (Heller, 1861) Kapapa Island, Oahu, HI, USA HQ315576 HQ315609 PSH Group
27 Lysmata cf. trisetacea (Heller, 1861) Kapapa Island, Oahu, HI, USA HQ315586 - PSH Group
27 Lysmata cf. trisetacea (Heller, 1861) Kapapa Island, Oahu, HI, USA HQ315587 - PSH Group
27 Lysmata cf. trisetacea (Heller, 1861) Kapapa Island, Oahu, HI, USA HQ315588 - PSH Group
28 Lysmata galapagensis Schmitt 1924 Nicaragua HQ315577 (2) HQ315611 PSH Group
28 Lysmata galapagensis Schmitt 1924 Islas Secas, Panama EU861480 -   
29 Lysmata moorei (Rathbun, 1901) Bahia, Brazil HQ315578 (2) - PSH Group
30 Lysmata moorei (Rathbun, 1901) Galeta, Panama EU861481 -   
31 Lysmata nilita Dohrn and Holthuis, 1950 Giglio, Italy EU861482 - PSH ?
32 Lysmata intermedia (Kingsley, 1879) Sebastian Inlet, FL, USA HQ315579 - PSH Group
32 Lysmata intermedia (Kingsley, 1879) Sebastian Inlet, FL, USA HQ315580 -   
33 Lysmata intermedia (Kingsley, 1879) Bocas Del Toro, Panama EU861484 -   
34 Lysmata cf. intermedia* (Kingsley, 1879) Bahia, Brazil HQ315581 - PSH Group
35 Lysmata cf. intermedia* (Kingsley, 1879) Puerto Rico HQ315582 (2) -   
36 Lysmata holthuisi Anker et al., 2009 Chumical, Panama EU861483 - PSH Group
37 Lysmata seticaudata (Risso, 1816) Cabo Raso, Cascais, Portugal HQ315583 (3) HQ315612 PSH Group
37 Lysmata seticaudata (Risso, 1816) Cabo Raso, Cascais, Portugal EU861486 -   
37 Lysmata seticaudata (Risso, 1816) Corsica, France EU861485 -   
38 Lysmata ternatensis De Man, 1902 Akajima, Keramas, Japan HQ315584 HQ315610 PSH Group
38 Lysmata ternatensis De Man, 1902 Akajima, Keramas, Japan HQ315585 -   
  Short branch       
39 Exhippolysmata ophloporoides (Holthuis, 1948) Espirito Santo, Brazil HQ315566 (2) HQ315616 PSH Group
39 Exhippolysmata ophloporoides (Holthuis, 1948) Ubatuba Bay, Brazil EU861510 -   
39 Exhippolysmata ophloporoides (Holthuis, 1948) Espirito Santo, Brazil HQ315567 -   
39 Exhippolysmata ophloporoides (Holthuis, 1948) Espirito Santo, Brazil HQ315568 -   
40 Lysmatella prima Borradaile, 1915 Sulawesi, Indonesia HQ315569 (2) HQ315614 PSH Group
  Unguiform branch       
41 Lysmata Iipkei Okuno and Fiedler, 2010 Sesoko Island, Okinawa, Japan HQ315574 (2) HQ315608 PSH Group
42 Lysmata cf. anchisteus Chace, 1972 Kapapa Island, Oahu, HI, USA HQ315606 (2) HQ315607 PSH Group
43 Lysmata hochi Bazea and Anker, 2008 Long Key, FL, USA EU861507 - PSH Group
  No branch info       
46 Merguia rhizophorae (Rathbun, 1900) Bocas Del Toro, Panama EU861508 - PH Group
48 Merguia oligodon (De Man, 1888) Iriomote Island, Japan HQ315570 HQ315617 PH Group
49 Alope orientalis (De Man, 1890) Camp Cove, Sydney, Australia HQ315559 HQ315613 ? ?
50 Hippolyte acuta (Stimpson, 1860) Aburatsubo, Kanagawa, Japan HQ315561 HQ315618   Group
51 Hippolyte williamsi Schmitt 1924 Puerto Aldea, Chile EU861512 -   Group
52 Hippolyte inermis Leach, 1815 Venice Lagoon, Italy EU861511 - PH? Group
53 Tozeuma carolinense Kingsley, 1878 St. Petersburg, FL, USA EU861513 -   Group
54 Heptacarpus futilirostris (Bate, 1888) Aburatsubo, Kanagawa, Japan HQ315562 HQ315619   Group
55 Heptacarpus geniculatus (Stimpson, 1860) Hayama, Kanagawa, Japan HQ315563 HQ315620   Group
56 Heptacarpus palpator (Owen, 1839) La Jolla, CA, USA EU861509 -   Group
57 Thor amboinensis (De Man, 1888) Bise Point, Okinawa, Japan HQ315571 -   Group
57 Thor amboinensis (De Man, 1888) Iriomote Island, Japan HQ315572 -   Group
58 Thor cf. manningi Chace, 1972 Puerto Rico HQ315573 - PPH Group
Family Barbouriidae Christoffersen, 1987      
44 Parhippolyte mistica (Clark, 1989) Odo Point, Okinawa, Japan HQ315560 HQ315615 PSH Group
45 Barbouria cubensis (von Martens, 1872) San Salvador, Bahamas HQ315565 HQ315627 PSH? Group
Family Alpheidae Rafinesque, 1815      
59 Synalpheus brevicarpus (Herrick, 1891) Puerto Rico HQ315564 HQ315626   Pair
  1. Accessory antennal branch types are indicated for Lysmata and closely allied taxa. Numbers of specimens (#) sharing the same sequence are indicated after the Genbank Accession Number. Accession numbers in bold face type represent new sequences. (*) denotes new putative species. (†)We use L. cf. acicula, as L. acicula (Rathbun) is the prior synonym used for Hawaii L. ternatensis. Body coloration and our 16S data and indicate that Hawaii L. ternatensis differs from L. ternatensis from Okinawa, Japan. The assignment of species to families is based on [64] and the assignment of sexual systems is based on [65] or where sufficient information is present. Hermaphroditism types: PH = protandric, PPH = partial protandric, PSH = protandric simultaneous, blank cells = no information or gonochoristic.