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Table 1 List of species, authorities, location of collections and GenBank Accession numbers used in the phylogenetic analyses for both 16S mtDNA and the 28S rDNA

From: The evolution of euhermaphroditism in caridean shrimps: a molecular perspective of sexual systems and systematics

16S Tree Identifier

Scientific Name

Authority

Location

16S

28S

Sexual System

Social System

Family

Hippolytidae

Bate, 1888

     
 

Short branch

      

1

Lysmata bahia

Rhyne and Lin, 2006

Salvador, Brazil

HQ315557

-

PSH

Group

1

Lysmata bahia

Rhyne and Lin, 2006

Salvador, Brazil

HQ315558

-

  

2

Lysmata bahia

Rhyne and Lin, 2006

Bocas Del Toro, Panama

EU861503

-

  

3

Lysmata ankeri

Rhyne and Lin, 2006

Haiti

HQ315597 (2)

-

PSH

Group

3

Lysmata ankeri

Rhyne and Lin, 2006

SMEE (Haiti)

EU861501

-

  

3

Lysmata ankeri

Rhyne and Lin, 2006

Haiti

HQ315598

-

  

4

Lysmata ankeri

Rhyne and Lin, 2006

Bahia, Brazil

HQ315599

-

  

4

Lysmata ankeri

Rhyne and Lin, 2006

Bahia, Brazil

HQ315600 (2)

-

  

5

Lysmata pederseni

Rhyne and Lin, 2006

Florida Keys, FL, USA

EU135832

-

PSH

Pair?/Low

6

Lysmata pederseni

Rhyne and Lin, 2006

Carrie Bow, Belize

EU861504

-

  

7

Lysmata pederseni

Rhyne and Lin, 2006

Florida Keys, FL, USA

HQ315601

-

  

8

Lysmata pederseni

Rhyne and Lin, 2006

Florida Keys, FL, USA

HQ315602

-

  

9

Lysmata boggessi

Rhyne and Lin, 2006

Hernando Beach, FL, USA

HQ315603 (2)

-

PSH

Group

9

Lysmata boggessi

Rhyne and Lin, 2006

St. Petersburg, FL, USA

EU861505

-

  

9

Lysmata boggessi

Rhyne and Lin, 2006

Unknown

DQ079719

DQ079794

  

10

Lysmata rafa

Rhyne and Anker, 2008

Florida Keys, FL, USA

HQ315604

-

PSH

Pair?/Low

11

Lysmata rafa

Rhyne and Anker, 2008

Aquarium store, FL, USA (Haiti)

EU861495

-

  

12

Lysmata wurdemanni

(Gibbes, 1850)

St. Petersburg, FL, USA

EU861497

-

PSH

Group

12

Lysmata wurdemanni

(Gibbes, 1850)

Florida Keys, FL, USA

EU135811

-

  

12

Lysmata wurdemanni

(Gibbes, 1850)

Port Aransas, TX, USA

EU861496

-

  

12

Lysmata wurdemanni

(Gibbes, 1850)

Florida Keys, FL, USA

HQ315605

HQ315624

  

13

Lysmata wurdemanni

(Gibbes, 1850)

Fort Pierce, FL, USA

EU861500

-

  

13

Lysmata wurdemanni

(Gibbes, 1850)

Sebastian Inlet, FL, USA

EU135831

-

  

14

Lysmata wurdemanni

(Gibbes, 1850)

Port Aransas, TX, USA

EU135796

-

  

15

Lysmata gracilirostris

Wicksten 2000

Venao, Panama (Pacific)

EU861502

-

PSH?

?

16

Lysmata nayaritensis

Wicksten 2000

Chumical, Panama

EU861506

-

PSH

Group

17

Lysmata amboinensis

(De Man, 1888)

Bali

HQ315589 (2)

HQ315622

PSH

Pair/Low

17

Lysmata amboinensis

(De Man, 1888)

Philippines

EU861488

-

  

18

Lysmata amboinensis

(De Man, 1888)

Java

EU861487

-

  

19

Lysmata grabhami

(Gordon, 1935)

Florida, USA

HQ315590

HQ315621

PSH

Pair/Low

19

Lysmata grabhami

(Gordon, 1935)

Brazil

HQ315591

-

  

19

Lysmata grabhami

(Gordon, 1935)

Florida, USA

HQ315592

-

  

19

Lysmata grabhami

(Gordon, 1935)

Haiti

EU861489

-

  

20

Lysmata grabhami

(Gordon, 1935)

Brazil

HQ315593

-

  

21

Lysmata grabhami

(Gordon, 1935)

Madeira, Portugal

EU861490

-

  

22

Lysmata debelius

Bruce, 1983

Indo-Pacific

HQ315594 (2)

-

PSH

Pair/Low

22

Lysmata debelius

Bruce, 1983

Sri Lanka

HQ315595

-

  

22

Lysmata debelius

Bruce, 1983

Philippines

EU861492

-

  

22

Lysmata debelius

Bruce, 1983

Indo-Pacific

EU861491

-

  

22

Lysmata debelius

Bruce, 1983

Unknown

DQ079718

DQ079793

  

23

Lysmata debelius

Bruce, 1983

Java

EU861493

-

  

24

Lysmata californica

(Stimpson, 1866)

La Jolla, CA, USA

HQ315596 (2)

-

PSH

Group

24

Lysmata californica

(Stimpson, 1866)

La Jolla, CA, USA

EU861498

-

  

25

Lysmata olavoi

Fransen, 1991

Azores, Portugal

EU861494

-

PSH?

?

 

Long branch

      

26

Lysmata cf. acicula †

(Rathbun, 1906)

Lahi lahi Point, Oahu, HI, USA

HQ315575

-

PSH

Group

27

Lysmata cf. trisetacea

(Heller, 1861)

Kapapa Island, Oahu, HI, USA

HQ315576

HQ315609

PSH

Group

27

Lysmata cf. trisetacea

(Heller, 1861)

Kapapa Island, Oahu, HI, USA

HQ315586

-

PSH

Group

27

Lysmata cf. trisetacea

(Heller, 1861)

Kapapa Island, Oahu, HI, USA

HQ315587

-

PSH

Group

27

Lysmata cf. trisetacea

(Heller, 1861)

Kapapa Island, Oahu, HI, USA

HQ315588

-

PSH

Group

28

Lysmata galapagensis

Schmitt 1924

Nicaragua

HQ315577 (2)

HQ315611

PSH

Group

28

Lysmata galapagensis

Schmitt 1924

Islas Secas, Panama

EU861480

-

  

29

Lysmata moorei

(Rathbun, 1901)

Bahia, Brazil

HQ315578 (2)

-

PSH

Group

30

Lysmata moorei

(Rathbun, 1901)

Galeta, Panama

EU861481

-

  

31

Lysmata nilita

Dohrn and Holthuis, 1950

Giglio, Italy

EU861482

-

PSH

?

32

Lysmata intermedia

(Kingsley, 1879)

Sebastian Inlet, FL, USA

HQ315579

-

PSH

Group

32

Lysmata intermedia

(Kingsley, 1879)

Sebastian Inlet, FL, USA

HQ315580

-

  

33

Lysmata intermedia

(Kingsley, 1879)

Bocas Del Toro, Panama

EU861484

-

  

34

Lysmata cf. intermedia*

(Kingsley, 1879)

Bahia, Brazil

HQ315581

-

PSH

Group

35

Lysmata cf. intermedia*

(Kingsley, 1879)

Puerto Rico

HQ315582 (2)

-

  

36

Lysmata holthuisi

Anker et al., 2009

Chumical, Panama

EU861483

-

PSH

Group

37

Lysmata seticaudata

(Risso, 1816)

Cabo Raso, Cascais, Portugal

HQ315583 (3)

HQ315612

PSH

Group

37

Lysmata seticaudata

(Risso, 1816)

Cabo Raso, Cascais, Portugal

EU861486

-

  

37

Lysmata seticaudata

(Risso, 1816)

Corsica, France

EU861485

-

  

38

Lysmata ternatensis

De Man, 1902

Akajima, Keramas, Japan

HQ315584

HQ315610

PSH

Group

38

Lysmata ternatensis

De Man, 1902

Akajima, Keramas, Japan

HQ315585

-

  
 

Short branch

      

39

Exhippolysmata ophloporoides

(Holthuis, 1948)

Espirito Santo, Brazil

HQ315566 (2)

HQ315616

PSH

Group

39

Exhippolysmata ophloporoides

(Holthuis, 1948)

Ubatuba Bay, Brazil

EU861510

-

  

39

Exhippolysmata ophloporoides

(Holthuis, 1948)

Espirito Santo, Brazil

HQ315567

-

  

39

Exhippolysmata ophloporoides

(Holthuis, 1948)

Espirito Santo, Brazil

HQ315568

-

  

40

Lysmatella prima

Borradaile, 1915

Sulawesi, Indonesia

HQ315569 (2)

HQ315614

PSH

Group

 

Unguiform branch

      

41

Lysmata Iipkei

Okuno and Fiedler, 2010

Sesoko Island, Okinawa, Japan

HQ315574 (2)

HQ315608

PSH

Group

42

Lysmata cf. anchisteus

Chace, 1972

Kapapa Island, Oahu, HI, USA

HQ315606 (2)

HQ315607

PSH

Group

43

Lysmata hochi

Bazea and Anker, 2008

Long Key, FL, USA

EU861507

-

PSH

Group

 

No branch info

      

46

Merguia rhizophorae

(Rathbun, 1900)

Bocas Del Toro, Panama

EU861508

-

PH

Group

48

Merguia oligodon

(De Man, 1888)

Iriomote Island, Japan

HQ315570

HQ315617

PH

Group

49

Alope orientalis

(De Man, 1890)

Camp Cove, Sydney, Australia

HQ315559

HQ315613

?

?

50

Hippolyte acuta

(Stimpson, 1860)

Aburatsubo, Kanagawa, Japan

HQ315561

HQ315618

 

Group

51

Hippolyte williamsi

Schmitt 1924

Puerto Aldea, Chile

EU861512

-

 

Group

52

Hippolyte inermis

Leach, 1815

Venice Lagoon, Italy

EU861511

-

PH?

Group

53

Tozeuma carolinense

Kingsley, 1878

St. Petersburg, FL, USA

EU861513

-

 

Group

54

Heptacarpus futilirostris

(Bate, 1888)

Aburatsubo, Kanagawa, Japan

HQ315562

HQ315619

 

Group

55

Heptacarpus geniculatus

(Stimpson, 1860)

Hayama, Kanagawa, Japan

HQ315563

HQ315620

 

Group

56

Heptacarpus palpator

(Owen, 1839)

La Jolla, CA, USA

EU861509

-

 

Group

57

Thor amboinensis

(De Man, 1888)

Bise Point, Okinawa, Japan

HQ315571

-

 

Group

57

Thor amboinensis

(De Man, 1888)

Iriomote Island, Japan

HQ315572

-

 

Group

58

Thor cf. manningi

Chace, 1972

Puerto Rico

HQ315573

-

PPH

Group

Family

Barbouriidae

Christoffersen, 1987

     

44

Parhippolyte mistica

(Clark, 1989)

Odo Point, Okinawa, Japan

HQ315560

HQ315615

PSH

Group

45

Barbouria cubensis

(von Martens, 1872)

San Salvador, Bahamas

HQ315565

HQ315627

PSH?

Group

Family

Alpheidae

Rafinesque, 1815

     

59

Synalpheus brevicarpus

(Herrick, 1891)

Puerto Rico

HQ315564

HQ315626

 

Pair

  1. Accessory antennal branch types are indicated for Lysmata and closely allied taxa. Numbers of specimens (#) sharing the same sequence are indicated after the Genbank Accession Number. Accession numbers in bold face type represent new sequences. (*) denotes new putative species. (†)We use L. cf. acicula, as L. acicula (Rathbun) is the prior synonym used for Hawaii L. ternatensis. Body coloration and our 16S data and indicate that Hawaii L. ternatensis differs from L. ternatensis from Okinawa, Japan. The assignment of species to families is based on [64] and the assignment of sexual systems is based on [65] or where sufficient information is present. Hermaphroditism types: PH = protandric, PPH = partial protandric, PSH = protandric simultaneous, blank cells = no information or gonochoristic.