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Table 4 Nucleotide substitutions between known cDNA and corresponding genomic sequences

From: Evolution of trappin genes in mammals

 

Armadillo

(2 × coverage)

Rabbit

(2 × coverage)

Cat

(1.87 × coverage)

Elephant

(2 × coverage)

Cow

(7 × coverage)

Human

(GRCh37)

SDHA

1/899

14/543

1/976

5/1222

ND

3/1650

MDH2

2/713

2/306

7/878

1/626

0/835

0/912

ATP5B

0/876

2/1237

4/1072

0/926

0/950

0/1335

GAPDH

6/413

ND

2/683

0/542

1/674

0/691

SDHB

0/476

1/468

0/586

ND

1/551

0/591

CS

0/646

0/672

2/564

2/677

2/653

0/673

IDH1

4/477

0/666

0/740

1/1077

7/1064

1/1114

total

13/4500

19/3892

16/5499

9/5070

11/4727

4/6966

substitution rate (%)

0.29

0.49

0.29

0.10

0.23

0.06

identity (%)

99.7

99.5

99.7

99.9

99.8

99.9

  1. Numbers show the nucleotide substitutions per the length of the sequences used for the analysis. The scaffold, contig, or accession numbers of the sequences are shown in Supplementary Table S1 (additional file 1). ND, no data.