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Table 2 List of number of individuals per lake and species and summary statistics of mtDNA and microsatellites (averaged across 15 loci).

From: Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes

 

Nicaragua

Managua

       
 

A. citrinellus

A. labiatus

A. citrinellus

A. labiatus

Tisma Pond

Asososca León

Lake Apoyeque

Lake Xiloá

Asososca Managua

Lake Masaya

Lake Apoyo

No. Individuals

345

268

265

32

56

40

90

522

44

149

248

mtDNA sequences

           

Haplotype richness

17.81

12.66

15.09

14

14.86

6.75

1.33

3.22

4.77

3.42

5.29

% private haplotypes

44%

76%

40%

43%

25%

100%

2%

66%

75%

39%

100%

Distance (no. mutations)

16

13

13

10

10

5

3

10

4

9

8

Haplotype diversity

0.963 ± 0.006

0.954 ± 0.008

0.942 ± 0.008

0.867 ± 0.005

0.883 ± 0.036

0.822 ± 0.040

0.128 ± 0.0047

0.824 ± 0.021

0.588 ± 0.074

0.807 ± 0.021

0.736 ± 0.028

Nucleotide diversity

0.005 ± 0.003

0.005 ± 0.003

0.005 ± 0.003

0.003 ± 0.002

0.005 ± 0.003

0.003 ± 0.002

0.0001 ± 0.0001

0.002 ± 0.001

0.001 ± 0.001

0.003 ± 0.002

0.002 ± 0.001

Tajima's D

-2.524**

-2.102**

-2.201**

-1.845*

-1.161ns

-0.504ns

-1.364*

-1.899*

0.041ns

-1.488*

-2.181**

microsatellites

           

Allelic richness

12.81

11.51

10.89

10.06

10.83

4.10

6.02

9.13

5.67

9.36

7.45

Gene diversity

0.780

0.757

0.744

0.717

0.746

0.421

0.580

0.668

0.524

0.737

0.590

Fis

0.035

0.009

0.048

0.048

0.043

0.152

0.038

0.117

0.044

0.033

0.142

  1. Haplotype and allelic richness are calculated haplotypes measures the maximum distance significant. based on the minimum population sample size (32 individuals). Distance between in mutations within each sample. Probability values: *P < 0.05, **P < 0.001, ns, non significant.