TY - JOUR AU - Holland, I. B. AU - Blight, M. A. PY - 1999 DA - 1999// TI - ABC-ATPases, adaptable energy generators fuelling transmembrane movement of a variety of molecules organisms from bacteria to humans JO - J Mol Biol VL - 293 UR - https://doi.org/10.1006/jmbi.1999.2993 DO - 10.1006/jmbi.1999.2993 ID - Holland1999 ER - TY - JOUR AU - Hollenstein, K. AU - Dawson, R. J. P. AU - Locher, K. P. PY - 2007 DA - 2007// TI - Structure and mechanism of ABC transporter proteins JO - Curr Opin Struc Biol VL - 17 UR - https://doi.org/10.1016/j.sbi.2007.07.003 DO - 10.1016/j.sbi.2007.07.003 ID - Hollenstein2007 ER - TY - JOUR AU - Kos, V. AU - Ford, R. C. PY - 2009 DA - 2009// TI - The ATP-binding cassette family: a structural perspective JO - Cellular and Molecular Life Sciences VL - 66 UR - https://doi.org/10.1007/s00018-009-0064-9 DO - 10.1007/s00018-009-0064-9 ID - Kos2009 ER - TY - JOUR AU - Klein, I. AU - Sarkadi, B. AU - Varadi, A. PY - 1999 DA - 1999// TI - An inventory of the human ABC proteins JO - Biochim Biophys Acta VL - 1461 UR - https://doi.org/10.1016/S0005-2736(99)00161-3 DO - 10.1016/S0005-2736(99)00161-3 ID - Klein1999 ER - TY - JOUR AU - Dean, M. AU - Hamon, Y. AU - Chimini, G. PY - 2001 DA - 2001// TI - The human ATP-binding cassette (ABC) transporter superfamily JO - Journal of Lipid Research VL - 42 ID - Dean2001 ER - TY - JOUR AU - Gottesman, M. M. AU - Ambudkar, S. V. PY - 2001 DA - 2001// TI - Overview: ABC transporters and human disease JO - Journal of Bioenergetics and Biomembranes VL - 33 UR - https://doi.org/10.1023/A:1012866803188 DO - 10.1023/A:1012866803188 ID - Gottesman2001 ER - TY - JOUR AU - Gottesman, M. M. AU - Fojo, T. AU - Bates, S. E. PY - 2002 DA - 2002// TI - Multidrug resistance in cancer: Role of ATP-dependent transporters JO - Nature Reviews Cancer VL - 2 UR - https://doi.org/10.1038/nrc706 DO - 10.1038/nrc706 ID - Gottesman2002 ER - TY - JOUR AU - Jones, P. M. AU - George, A. M. PY - 2005 DA - 2005// TI - Multidrug resistance in parasites: ABC transporters, P-glycoproteins and molecular modelling JO - International Journal for Parasitology VL - 35 UR - https://doi.org/10.1016/j.ijpara.2005.01.012 DO - 10.1016/j.ijpara.2005.01.012 ID - Jones2005 ER - TY - JOUR AU - Lanning, C. L. AU - Fine, R. L. AU - Corcoran, J. J. AU - Ayad, H. M. AU - Rose, R. L. AU - AbouDonia, M. B. PY - 1996 DA - 1996// TI - Tobacco budworm P-glycoprotein: Biochemical characterization and its involvement in pesticide resistance JO - Biochimica Et Biophysica Acta-General Subjects VL - 1291 UR - https://doi.org/10.1016/0304-4165(96)00060-8 DO - 10.1016/0304-4165(96)00060-8 ID - Lanning1996 ER - TY - JOUR AU - Aurade, R. AU - Jayalakshmi, S. K. AU - Sreeramulu, K. PY - 2006 DA - 2006// TI - Stimulatory effect of insecticides on partially purified P-glycoprotein ATPase from the resistant pest Helicoverpa armigera JO - Biochemistry and Cell Biology-Biochimie Et Biologie Cellulaire VL - 84 UR - https://doi.org/10.1139/o06-194 DO - 10.1139/o06-194 ID - Aurade2006 ER - TY - JOUR AU - Sreeramulu, K. AU - Srinivas, R. AU - Jayalakshmi, S. K. PY - 2006 DA - 2006// TI - Effect of insecticides on P-glycoprotein ATPase activity of the insecticide resistant pest Helicoverpa armigera JO - Biochemistry and Cell Biology-Biochimie Et Biologie Cellulaire VL - 84 ID - Sreeramulu2006 ER - TY - JOUR AU - O'Connor, R. PY - 2007 DA - 2007// TI - The pharmacology of cancer resistance JO - Anticancer Research VL - 27 ID - O'Connor2007 ER - TY - JOUR AU - Franke, R. M. AU - Sparreboom, A. PY - 2010 DA - 2010// TI - Drug Transporters: Recent Advances and Therapeutic Applications JO - Clinical Pharmacology & Therapeutics VL - 87 UR - https://doi.org/10.1038/clpt.2009.239 DO - 10.1038/clpt.2009.239 ID - Franke2010 ER - TY - JOUR AU - Kroetz, D. PY - 2009 DA - 2009// TI - Involvement of ABC transporters in pharmacokinetics and toxicokinetics JO - Toxicology Letters VL - 189 UR - https://doi.org/10.1016/j.toxlet.2009.06.009 DO - 10.1016/j.toxlet.2009.06.009 ID - Kroetz2009 ER - TY - JOUR AU - Dean, M. AU - Annilo, T. PY - 2005 DA - 2005// TI - Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates JO - Annual Review of Genomics and Human Genetics VL - 6 UR - https://doi.org/10.1146/annurev.genom.6.080604.162122 DO - 10.1146/annurev.genom.6.080604.162122 ID - Dean2005 ER - TY - JOUR AU - Roth, C. W. AU - Holm, I. AU - Graille, M. AU - Dehoux, P. AU - Rzhetsky, A. AU - Wincker, P. AU - Weissenbach, J. AU - Brey, P. T. PY - 2003 DA - 2003// TI - Identification of the Anopheles gambiae ATP-binding cassette transporter superfamily genes JO - Molecules and Cells VL - 15 ID - Roth2003 ER - TY - JOUR AU - Sheps, J. A. AU - Ralph, S. AU - Zhao, Z. Y. AU - Baillie, D. L. AU - Ling, V. PY - 2004 DA - 2004// TI - The ABC transporter gene family of Caenorhabditis elegans has implications for the evolutionary dynamics of multidrug resistance in eukaryotes JO - Genome Biology VL - 5 UR - https://doi.org/10.1186/gb-2004-5-3-r15 DO - 10.1186/gb-2004-5-3-r15 ID - Sheps2004 ER - TY - JOUR AU - Jungwirth, H. AU - Kuchler, K. PY - 2006 DA - 2006// TI - Yeast ABC transporters - A tale of sex, stress, drugs and aging JO - Febs Letters VL - 580 UR - https://doi.org/10.1016/j.febslet.2005.12.050 DO - 10.1016/j.febslet.2005.12.050 ID - Jungwirth2006 ER - TY - JOUR AU - Moussatova, A. AU - Kandt, C. AU - O'Mara, M. L. AU - Tieleman, D. P. PY - 2008 DA - 2008// TI - ATP-binding cassette transporters in Escherichia coli JO - Biochimica Et Biophysica Acta-Biomembranes VL - 1778 UR - https://doi.org/10.1016/j.bbamem.2008.06.009 DO - 10.1016/j.bbamem.2008.06.009 ID - Moussatova2008 ER - TY - JOUR AU - Linton, K. J. AU - Higgins, C. F. PY - 1998 DA - 1998// TI - The Escherichia coli ATP-binding cassette (ABC) proteins JO - Molecular Microbiology VL - 28 UR - https://doi.org/10.1046/j.1365-2958.1998.00764.x DO - 10.1046/j.1365-2958.1998.00764.x ID - Linton1998 ER - TY - JOUR AU - Davidson, A. L. AU - Chen, J. PY - 2004 DA - 2004// TI - ATP-binding cassette transporters in bacteria JO - Annual Review of Biochemistry VL - 73 UR - https://doi.org/10.1146/annurev.biochem.73.011303.073626 DO - 10.1146/annurev.biochem.73.011303.073626 ID - Davidson2004 ER - TY - JOUR AU - Davidson, A. L. AU - Dassa, E. AU - Orelle, C. AU - Chen, J. PY - 2008 DA - 2008// TI - Structure, function, and evolution of bacterial ATP-binding cassette systems JO - Microbiology and Molecular Biology Reviews VL - 72 UR - https://doi.org/10.1128/MMBR.00031-07 DO - 10.1128/MMBR.00031-07 ID - Davidson2008 ER - TY - JOUR AU - Perez-Victoria, J. M. AU - Parodi-Talice, A. AU - Torres, C. AU - Gamarro, F. AU - Castanys, S. PY - 2001 DA - 2001// TI - ABC transporters in the protozoan parasite Leishmania JO - Int Microbiol VL - 4 ID - Perez-Victoria2001 ER - TY - JOUR AU - Klokouzas, A. AU - Shahi, S. AU - Hladky, S. B. AU - Barrand, M. A. AU - van Veen, H. W. PY - 2003 DA - 2003// TI - ABC transporters and drug resistance in parasitic protozoa JO - International Journal of Antimicrobial Agents VL - 22 UR - https://doi.org/10.1016/S0924-8579(03)00210-3 DO - 10.1016/S0924-8579(03)00210-3 ID - Klokouzas2003 ER - TY - JOUR AU - Collins, K. AU - Gorovsky, M. A. PY - 2005 DA - 2005// TI - Tetrahymena thermophila JO - Current Biology VL - 15 UR - https://doi.org/10.1016/j.cub.2005.04.039 DO - 10.1016/j.cub.2005.04.039 ID - Collins2005 ER - TY - JOUR AU - Fillingham, J. S. AU - Chilcoat, N. D. AU - Turkewitz, A. P. AU - Orias, E. AU - Reith, M. AU - Pearlman, R. E. PY - 2002 DA - 2002// TI - Analysis of expressed sequence tags (ESTs) in the ciliated protozoan Tetrahymena thermophila JO - Journal of Eukaryotic Microbiology VL - 49 UR - https://doi.org/10.1111/j.1550-7408.2002.tb00350.x DO - 10.1111/j.1550-7408.2002.tb00350.x ID - Fillingham2002 ER - TY - JOUR AU - Eisen, J. A. AU - Coyne, R. S. AU - Wu, M. AU - Wu, D. Y. AU - Thiagarajan, M. AU - Wortman, J. R. AU - Badger, J. H. AU - Ren, Q. H. AU - Amedeo, P. AU - Jones, K. M. PY - 2006 DA - 2006// TI - Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote JO - Plos Biology VL - 4 UR - https://doi.org/10.1371/journal.pbio.0040286 DO - 10.1371/journal.pbio.0040286 ID - Eisen2006 ER - TY - JOUR AU - Miao, W. AU - Xiong, J. AU - Bowen, J. AU - Wang, W. AU - Liu, Y. AU - Braguinets, O. AU - Grigull, J. AU - Pearlman, R. E. AU - Orias, E. AU - Gorovsky, M. A. PY - 2009 DA - 2009// TI - Microarray analyses of gene expression during the Tetrahymena thermophila life cycle JO - PLoS ONE VL - 4 UR - https://doi.org/10.1371/journal.pone.0004429 DO - 10.1371/journal.pone.0004429 ID - Miao2009 ER - TY - STD TI - Stover NA, Krieger CJ, Binkley G, Dong Q, Fisk DG, Nash R, Sethuraman A, Weng S, Cherry JM: Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research. Nucleic Acids Research. 2006, D500-503. 10.1093/nar/gkj054. 34 Database ID - ref29 ER - TY - JOUR AU - Fu, C. J. AU - Xiong, J. AU - Miao, W. PY - 2009 DA - 2009// TI - Genome-wide identification and characterization of cytochrome P450 monooxygenase genes in the ciliate Tetrahymena thermophila JO - Bmc Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-208 DO - 10.1186/1471-2164-10-208 ID - Fu2009 ER - TY - JOUR AU - Sanchez-Fernandez, R. AU - Davies, T. G. E. AU - Coleman, J. O. D. AU - Rea, P. A. PY - 2001 DA - 2001// TI - The Arabidopsis thaliana ABC protein superfamily, a complete inventory JO - Journal of Biological Chemistry VL - 276 UR - https://doi.org/10.1074/jbc.M103104200 DO - 10.1074/jbc.M103104200 ID - Sanchez-Fernandez2001 ER - TY - JOUR AU - Anjard, C. AU - Loomis, W. F. PY - 2002 DA - 2002// TI - Evolutionary analyses of ABC transporters of Dictyostelium discoideum JO - Eukaryotic Cell VL - 1 UR - https://doi.org/10.1128/EC.1.4.643-652.2002 DO - 10.1128/EC.1.4.643-652.2002 ID - Anjard2002 ER - TY - JOUR AU - Gbelska, Y. AU - Krijger, J. J. AU - Breunig, K. D. PY - 2006 DA - 2006// TI - Evolution of gene families: the multidrug resistance transporter genes in five related yeast species JO - Fems Yeast Research VL - 6 UR - https://doi.org/10.1111/j.1567-1364.2006.00058.x DO - 10.1111/j.1567-1364.2006.00058.x ID - Gbelska2006 ER - TY - JOUR AU - Mengerink, K. J. AU - Vacquier, V. D. PY - 2002 DA - 2002// TI - An ATP-binding cassette transporter is a major glycoprotein of sea urchin sperm membranes JO - Journal of Biological Chemistry VL - 277 UR - https://doi.org/10.1074/jbc.M207184200 DO - 10.1074/jbc.M207184200 ID - Mengerink2002 ER - TY - JOUR AU - Iwamoto, M. AU - Sugai, T. AU - Nakaoka, Y. PY - 2004 DA - 2004// TI - Cell division induced by mechanical stimulation in starved Tetrahymena thermophila: cell cycle without synthesis of macronuclear DNA JO - Cell Biology International VL - 28 UR - https://doi.org/10.1016/j.cellbi.2004.04.004 DO - 10.1016/j.cellbi.2004.04.004 ID - Iwamoto2004 ER - TY - JOUR AU - Csere, P. AU - Lill, R. AU - Kispal, G. PY - 1998 DA - 1998// TI - Identification of a human mitochondrial ABC transporter, the functional orthologue of yeast Atm1p JO - FEBS Letters VL - 441 UR - https://doi.org/10.1016/S0014-5793(98)01560-9 DO - 10.1016/S0014-5793(98)01560-9 ID - Csere1998 ER - TY - JOUR AU - Mitsuhashi, N. AU - Miki, T. AU - Senbongi, H. AU - Yokoi, N. AU - Yano, H. AU - Miyazaki, M. AU - Nakajima, N. AU - Iwanaga, T. AU - Yokoyama, Y. AU - Shibata, T. PY - 2000 DA - 2000// TI - MTABC3, a novel mitochondrial ATP-binding cassette protein involved in iron homeostasis JO - Journal of Biological Chemistry VL - 275 UR - https://doi.org/10.1074/jbc.275.23.17536 DO - 10.1074/jbc.275.23.17536 ID - Mitsuhashi2000 ER - TY - JOUR AU - Perez-Tomas, R. PY - 2006 DA - 2006// TI - Multidrug resistance: Retrospect and prospects in anti-cancer drug treatment JO - Current Medicinal Chemistry VL - 13 UR - https://doi.org/10.2174/092986706777585077 DO - 10.2174/092986706777585077 ID - Perez-Tomas2006 ER - TY - JOUR AU - Mcgrath, J. P. AU - Varshavsky, A. PY - 1989 DA - 1989// TI - The Yeast Ste6 Gene Encodes a Homolog of the Mammalian Multidrug Resistance P-Glycoprotein JO - Nature VL - 340 UR - https://doi.org/10.1038/340400a0 DO - 10.1038/340400a0 ID - Mcgrath1989 ER - TY - JOUR AU - Bamdad, M. AU - Reader, S. AU - Groliere, C. A. AU - Bohatier, J. AU - Denizeau, F. PY - 1997 DA - 1997// TI - Uptake and efflux of polycyclic aromatic hydrocarbons by Tetrahymena pyriformis: Evidence for a resistance mechanism JO - Cytometry VL - 28 UR - https://doi.org/3.0.CO;2-N DO - 3.0.CO;2-N ID - Bamdad1997 ER - TY - JOUR AU - Bamdad, M. AU - Brousseau, P. AU - Denizeau, F. PY - 1999 DA - 1999// TI - Identification of a multidrug resistance-like system in Tetrahymena pyriformis: evidence for a new detoxication mechanism in freshwater ciliates JO - Febs Letters VL - 456 UR - https://doi.org/10.1016/S0014-5793(99)00978-3 DO - 10.1016/S0014-5793(99)00978-3 ID - Bamdad1999 ER - TY - JOUR AU - Leslie, E. M. AU - Deeley, R. G. AU - Cole, S. P. C. PY - 2005 DA - 2005// TI - Multidrug resistance proteins: role of P-glycoprotein, MRP1, MRP2, and BCRP (ABCG2) in tissue defense JO - Toxicology and Applied Pharmacology VL - 204 UR - https://doi.org/10.1016/j.taap.2004.10.012 DO - 10.1016/j.taap.2004.10.012 ID - Leslie2005 ER - TY - JOUR AU - Depeille, P. AU - Cuq, P. AU - Mary, S. AU - Passagne, I. AU - Evrard, A. AU - Cupissol, D. AU - Vian, L. PY - 2004 DA - 2004// TI - Glutathione S-transferase M1 and multidrug resistance protein 1 Act in synergy to protect melanoma cells from vincristine effects JO - Molecular Pharmacology VL - 65 UR - https://doi.org/10.1124/mol.65.4.897 DO - 10.1124/mol.65.4.897 ID - Depeille2004 ER - TY - JOUR AU - Zolman, B. K. AU - Silva, I. D. AU - Bartel, B. PY - 2001 DA - 2001// TI - The Arabidopsis pxa1 mutant is defective in an ATP-binding cassette transporter-like protein required for peroxisomal fatty acid beta-oxidation JO - Plant Physiology VL - 127 UR - https://doi.org/10.1104/pp.010550 DO - 10.1104/pp.010550 ID - Zolman2001 ER - TY - JOUR AU - Hettema, E. H. AU - Distel, B. AU - Tabak, H. F. PY - 1999 DA - 1999// TI - Import of proteins into peroxisomes JO - Bba-Mol Cell Res VL - 1451 ID - Hettema1999 ER - TY - JOUR AU - Shani, N. AU - Valle, D. PY - 1996 DA - 1996// TI - A Saccharomyces cerevisiae homolog of the human adrenoleukodystrophy transporter is a heterodimer of two half ATP-binding cassette transporters JO - Proceedings of the National Academy of Sciences of the United States of America VL - 93 UR - https://doi.org/10.1073/pnas.93.21.11901 DO - 10.1073/pnas.93.21.11901 ID - Shani1996 ER - TY - JOUR AU - Dean, M. AU - Rzhetsky, A. AU - Allikmets, R. PY - 2001 DA - 2001// TI - The human ATP-binding cassette (ABC) transporter superfamily JO - Genome Res VL - 11 UR - https://doi.org/10.1101/gr.GR-1649R DO - 10.1101/gr.GR-1649R ID - Dean2001 ER - TY - JOUR AU - van Roermund, C. W. T. AU - Visser, W. F. AU - Ijlst, L. AU - van Cruchten, A. AU - Boek, M. AU - Kulik, W. AU - Waterham, H. R. AU - Wanders, R. J. A. PY - 2008 DA - 2008// TI - The human peroxisomal ABC half transporter ALDP functions as a homodimer and accepts acyl-CoA esters JO - Faseb Journal VL - 22 UR - https://doi.org/10.1096/fj.08-110866 DO - 10.1096/fj.08-110866 ID - van Roermund2008 ER - TY - JOUR AU - Bisbal, C. AU - Martinand, C. AU - Silhol, M. AU - Lebleu, B. AU - Salehzada, T. PY - 1995 DA - 1995// TI - Cloning and Characterization of a Rnase-L Inhibitor - a New Component of the Interferon-Regulated 2-5a Pathway JO - Journal of Biological Chemistry VL - 270 UR - https://doi.org/10.1074/jbc.270.22.13308 DO - 10.1074/jbc.270.22.13308 ID - Bisbal1995 ER - TY - JOUR AU - Marton, M. J. AU - deAldana, C. R. V. AU - Qiu, H. F. AU - Chakraburtty, K. AU - Hinnebusch, A. G. PY - 1997 DA - 1997// TI - Evidence that GCN1 and GCN20, translational regulators of GCN4, function on elongating ribosomes in activation of eIF2 alpha kinase GCN2 JO - Mol Cell Biol VL - 17 UR - https://doi.org/10.1128/MCB.17.8.4474 DO - 10.1128/MCB.17.8.4474 ID - Marton1997 ER - TY - JOUR AU - Kage, K. AU - Tsukahara, S. AU - Sugiyama, T. AU - Asada, S. AU - Ishikawa, E. AU - Tsuruo, T. AU - Sugimoto, Y. PY - 2002 DA - 2002// TI - Dominant-negative inhibition of breast cancer resistance protein as drug efflux pump through the inhibition of S-S dependent homodimerization JO - International Journal of Cancer VL - 97 UR - https://doi.org/10.1002/ijc.10100 DO - 10.1002/ijc.10100 ID - Kage2002 ER - TY - JOUR AU - Xu, J. K. AU - Liu, Y. AU - Yang, Y. Y. AU - Bates, S. AU - Zhang, J. T. PY - 2004 DA - 2004// TI - Characterization of oligomeric human half-ABC transporter ATP-binding cassette G2 JO - Journal of Biological Chemistry VL - 279 UR - https://doi.org/10.1074/jbc.M310785200 DO - 10.1074/jbc.M310785200 ID - Xu2004 ER - TY - JOUR AU - Quentin, Y. AU - Fichant, G. PY - 2000 DA - 2000// TI - ABCdb: an ABC transporter database JO - J Mol Microb Biotech VL - 2 ID - Quentin2000 ER - TY - JOUR AU - Tomii, K. AU - Kanehisa, M. PY - 1998 DA - 1998// TI - A comparative analysis of ABC transporters in complete microbial genomes JO - Genome Res VL - 8 ID - Tomii1998 ER - TY - JOUR AU - Saurin, W. AU - Hofnung, M. AU - Dassa, E. PY - 1999 DA - 1999// TI - Getting in or out: Early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters JO - J Mol Evol VL - 48 UR - https://doi.org/10.1007/PL00006442 DO - 10.1007/PL00006442 ID - Saurin1999 ER - TY - JOUR AU - Vogel, C. AU - Bashton, M. AU - Kerrison, N. D. AU - Chothia, C. AU - Teichmann, S. A. PY - 2004 DA - 2004// TI - Structure, function and evolution of multidomain proteins JO - Curr Opin Struc Biol VL - 14 UR - https://doi.org/10.1016/j.sbi.2004.03.011 DO - 10.1016/j.sbi.2004.03.011 ID - Vogel2004 ER - TY - JOUR AU - Garcia, O. AU - Bouige, P. AU - Forestier, C. AU - Dassa, E. PY - 2004 DA - 2004// TI - Inventory and comparative analysis of rice Arabidopsis ATP-binding cassette (ABC) systems JO - J Mol Biol VL - 343 UR - https://doi.org/10.1016/j.jmb.2004.07.093 DO - 10.1016/j.jmb.2004.07.093 ID - Garcia2004 ER - TY - JOUR AU - Biemans-Oldehinkel, E. AU - Doeven, M. K. AU - Poolman, B. PY - 2006 DA - 2006// TI - ABC transporter architecture and regulatory roles of accessory domains JO - FEBS Letters VL - 580 UR - https://doi.org/10.1016/j.febslet.2005.11.079 DO - 10.1016/j.febslet.2005.11.079 ID - Biemans-Oldehinkel2006 ER - TY - JOUR AU - Smith, P. C. AU - Karpowich, N. AU - Millen, L. AU - Moody, J. E. AU - Rosen, J. AU - Thomas, P. J. AU - Hunt, J. F. PY - 2002 DA - 2002// TI - ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer JO - Mol Cell VL - 10 UR - https://doi.org/10.1016/S1097-2765(02)00576-2 DO - 10.1016/S1097-2765(02)00576-2 ID - Smith2002 ER - TY - JOUR AU - Nguyen, H. D. AU - Yoshihama, M. AU - Kenmochi, N. PY - 2007 DA - 2007// TI - The evolution of spliceosomal Introns in alveolates JO - Molecular Biology and Evolution VL - 24 UR - https://doi.org/10.1093/molbev/msm037 DO - 10.1093/molbev/msm037 ID - Nguyen2007 ER - TY - JOUR AU - Zufall, R. A. AU - McGrath, C. L. AU - Muse, S. V. AU - Katz, L. A. PY - 2006 DA - 2006// TI - Genome architecture drives protein evolution in ciliates JO - Molecular Biology and Evolution VL - 23 UR - https://doi.org/10.1093/molbev/msl032 DO - 10.1093/molbev/msl032 ID - Zufall2006 ER - TY - JOUR AU - Lynch, M. AU - Conery, J. S. PY - 2000 DA - 2000// TI - The evolutionary fate and consequences of duplicate genes JO - Science VL - 290 UR - https://doi.org/10.1126/science.290.5494.1151 DO - 10.1126/science.290.5494.1151 ID - Lynch2000 ER - TY - JOUR AU - Marques, A. C. AU - Vinckenbosh, N. AU - Brawand, D. AU - Kaessmann, H. PY - 2008 DA - 2008// TI - Functional diversification of duplicate genes through subcellular adaptation of encoded proteins JO - Genome Biology VL - 9 UR - https://doi.org/10.1186/gb-2008-9-3-r54 DO - 10.1186/gb-2008-9-3-r54 ID - Marques2008 ER - TY - JOUR AU - Innan, H. AU - Kondrashov, F. PY - 2010 DA - 2010// TI - The evolution of gene duplications: classifying and distinguishing between models JO - Nature Reviews Genetics VL - 11 ID - Innan2010 ER - TY - JOUR AU - Gu, X. PY - 2004 DA - 2004// TI - Statistical framework for phylogenomic analysis of gene family expression profiles JO - Genetics VL - 167 UR - https://doi.org/10.1534/genetics.167.1.531 DO - 10.1534/genetics.167.1.531 ID - Gu2004 ER - TY - JOUR AU - Oakley, T. H. AU - Gu, Z. L. AU - Abouheif, E. AU - Patel, N. H. AU - Li, W. H. PY - 2005 DA - 2005// TI - Comparative methods for the analysis of gene-expression evolution: An example using yeast functional genomic data JO - Molecular Biology and Evolution VL - 22 UR - https://doi.org/10.1093/molbev/msh257 DO - 10.1093/molbev/msh257 ID - Oakley2005 ER - TY - JOUR AU - Lynch, M. AU - Force, A. PY - 2000 DA - 2000// TI - The probability of duplicate gene preservation by subfunctionalization JO - Genetics VL - 154 ID - Lynch2000 ER - TY - JOUR AU - Hughes, T. AU - Liberles, D. A. PY - 2007 DA - 2007// TI - The pattern of evolution of smaller-scale gene duplicates in mammalian genomes is more consistent with neo-than subfunctionalisation JO - J Mol Evol VL - 65 UR - https://doi.org/10.1007/s00239-007-9041-9 DO - 10.1007/s00239-007-9041-9 ID - Hughes2007 ER - TY - JOUR AU - Kondrashov, F. A. AU - Rogozin, I. B. AU - Wolf, Y. I. AU - Koonin, E. V. PY - 2002 DA - 2002// TI - Selection in the evolution of gene duplications JO - Genome Biology VL - 3 UR - https://doi.org/10.1186/gb-2002-3-2-research0008 DO - 10.1186/gb-2002-3-2-research0008 ID - Kondrashov2002 ER - TY - JOUR AU - Veitia, R. A. PY - 2005 DA - 2005// TI - Gene dosage balance: deletions, duplications and dominance JO - Trends Genet VL - 21 UR - https://doi.org/10.1016/j.tig.2004.11.002 DO - 10.1016/j.tig.2004.11.002 ID - Veitia2005 ER - TY - JOUR AU - Conant, G. C. AU - Wolfe, K. H. PY - 2006 DA - 2006// TI - Functional partitioning of yeast co-expression networks after genome duplication JO - Plos Biology VL - 4 UR - https://doi.org/10.1371/journal.pbio.0040109 DO - 10.1371/journal.pbio.0040109 ID - Conant2006 ER - TY - JOUR AU - Capella-Gutierrez, S. AU - Silla-Martinez, J. M. AU - Gabaldon, T. PY - 2009 DA - 2009// TI - trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp348 DO - 10.1093/bioinformatics/btp348 ID - Capella-Gutierrez2009 ER - TY - JOUR AU - Guindon, S. AU - Dufayard, J. F. AU - Hordijk, W. AU - Lefort, V. AU - Gascuel, O. PY - 2009 DA - 2009// TI - PhyML: Fast and Accurate Phylogeny Reconstruction by Maximum Likelihood JO - Infection Genetics and Evolution VL - 9 ID - Guindon2009 ER - TY - JOUR AU - Orias, E. AU - Hamilton, E. P. AU - Orias, J. D. PY - 2000 DA - 2000// TI - Tetrahymena as a laboratory organism: Useful strains, cell culture, and cell line maintenance JO - Methods in Cell Biology, Vol 62 VL - 62 UR - https://doi.org/10.1016/S0091-679X(08)61530-7 DO - 10.1016/S0091-679X(08)61530-7 ID - Orias2000 ER - TY - JOUR AU - Miao, W. AU - Yu, T. AU - Orias, E. AU - Wan, M. L. AU - Fu, C. J. PY - 2006 DA - 2006// TI - Identification of differentially expressed genes in Tetrahmena thermophila in response to dichlorodiphenyltrichloroethane (DDT) by suppression subtractive hybridization JO - Environmental Microbiology VL - 8 UR - https://doi.org/10.1111/j.1462-2920.2006.00988.x DO - 10.1111/j.1462-2920.2006.00988.x ID - Miao2006 ER - TY - JOUR AU - Feng, L. F. AU - Miao, W. AU - Wu, Y. X. PY - 2007 DA - 2007// TI - Difterentially expressed genes of Tetrahymena thermophila in response to tributyltin (TBT) identified by suppression subtractive hybridization and real time quantitative PCR JO - Aquatic Toxicology VL - 81 UR - https://doi.org/10.1016/j.aquatox.2006.11.005 DO - 10.1016/j.aquatox.2006.11.005 ID - Feng2007 ER - TY - JOUR AU - Posada, D. AU - Crandall, K. A. PY - 1998 DA - 1998// TI - MODELTEST: testing the model of DNA substitution JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.9.817 DO - 10.1093/bioinformatics/14.9.817 ID - Posada1998 ER - TY - CHAP AU - Swofford, D. L. PY - 2001 DA - 2001// BT - PAUP*: Phylogenetic Analysis Using Parsimony (and Other Methods) 4.0 Beta PB - Sinauer Associates CY - Sunderland, Mass ID - Swofford2001 ER - TY - JOUR AU - Lee, C. AU - Blay, S. AU - Mooers, A. O. AU - Singh, A. AU - Oakley, T. H. PY - 2006 DA - 2006// TI - CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies JO - Evol Bioinform Online VL - 2 ID - Lee2006 ER - TY - CHAP AU - WP Maddison, D. M. PY - 2008 DA - 2008// BT - Mesquite: a modular system for evolutionary analysis. Version 2.5 ID - WP Maddison2008 ER - TY - JOUR AU - Yang, Z. H. PY - 1997 DA - 1997// TI - PAML: a program package for phylogenetic analysis by maximum likelihood JO - Computer Applications in the Biosciences VL - 13 ID - Yang1997 ER -