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Table 1 Introns selected for amplification and sequencing in six species, and final outcome

From: Novel intron markers to study the phylogeny of closely related mammalian species

Intron name

ENSEMBL Code

Length (H. sapiens)

Primer sequences (Forward and Reverse)

Result

SLC38A7-8

ENSG00000103042

877

RGGCCTRGCYGSCTGCTTCATCTT TCVGASAGYTTGGCTTGRATGAGGCA

+

COPS7A-4

ENSG00000111652

952

TACAGCATYGGRCGRGACATCCA TCACYTGCTCCTCRATGCCKGACA

+

CARHSP1-1

ENSG00000153048

698

ACYCGCCGSACSAGGACCTTCT GTRATGAAGCCRTGGCCCTTGGA

+

GAD2-1

ENSG00000136750

724

GGCTCHRGCTTYTGGTCYTTYGG YCCGAKGCCKCCSGTGAACTTCT

+

JMJD5-2

ENSG00000155666

1124

ACCABTGGCCVTGCATGMAGARGT TGATGAACTCRYTGACBGTCATGAG

+

OSTA-5

ENSG00000163959

535

TGMWGGYCATGGTGGAAGGCTTTG AGATGCCRTCRGGGAYGAGRAACA

+

PNPO-3

ENSG00000108439

843

GATGGCTTCCRHTTCTWCACTAACTT GGYTCCCARTAGAAGACMAKSGA

+

GAD2-3

ENSG00000136750

1051

TGCTCTAYGGRGAYKCMGAGAAG CAGAAACGCCARMGTGGSCCTTT

(1)

CLCN6-17

ENSG00000011021

1376

GTGGCCAAATGGACAGGGGACTTT TTGCCCTTCATGAACTCCTTCTCGT

(2)

TFPI2-2

ENSG00000105825

913

TACTACTAYGACAGGYACWYGCAGA CATGTCATRGAWSTTAGATTRAAGAA

(2)

CSE1L-12

ENSG00000124207

1496

CATGGRATYACAMAAGCWAATGA TAYTTRATRCCRTCAGCTTTAAG

(3)

TBC1D21-8

ENSG00000167139

1007

TCTTYCCCTGGTTCTGYYTCTGCTT CAKGCWGTAGGCCACCAGCACCT

(4)

  1. The intron name is taken from the gene name according to the HUGO Gene Nomenclature Committee followed by a dash and the intron number. In the "Result" column, the (+) symbol indicates successful sequencing in the whole panel of species; (1), non-specific amplification in one species; (2), non-specific amplification in several species; (3), intron of very large size in some species; (4), double PCR band in some species.