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Table 2 Summary of SH tests for complete gene datasets

From: Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins

Gene

SH - gene

SH - ideal

Best-fit Tree

Adam2

1.0000

0.1200

NS

Catsper1 Exon1

1.0000

0.1460

NS

Catsper1 mammals

0.5020

1.0000

NS

Col1a1

1.0000

0.2650

NS

Ph20

1.0000

0.3220

NS

Porimin

0.4040

1.0000

NS

Prkar2a

1.0000

0.0490

gene

Semg2

1.0000

0.1010

NS

Sp56

1.0000

0.2380

NS

Zp2

0.1620

1.0000

NS

Zp3

1.0000

0.0050

gene

  1. For each gene, the likelihood of estimated Bayesian phylogeny (gene) and corresponding ideal species tree (ideal) to fit the dataset were determined with the SH test at a 5% significance level. Values equal to 1.0000 represent the tree with the lowest log likelihood, values less than 0.05 refer to those cases where there is a significant difference between the two topologies, and the gene tree is a significantly better fit to the data. NS = No Statistical significance between gene and species tree, in these cases the species tree was used.