Table 1 Genomic characteristics of bivalve mtDNAs
Species | GenBank Accession Number | Positive strand | Protein-coding gene | rrnL gene | rrnS gene | tRNA | Largest NCR | Reference | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Length bp | A+T% | No. of AA | A+T% | Length bp | A+T% | Length bp | A+T% | Length bp | A+T% | Length bp | A+T% | Â | |||
| Â | Â | Â | Â | Â | Total | 1st cdn pos. | 2nd cdn pos. | 3rd cdn pos. | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Lampsilis ornata | NC_005335 | 16,060 | 62.4 | 3,710 | 61.6 | 56.5 | 61.6 | 67.1 | 1,315 | 62.8 | 846 | 60.5 | 1,368 | 64.6 | 283 | 64.7 | [10] |
Inversidens japanensis | AB055625 | 16,826 | 57.2 | 3,647 | 56.6 | 53.6 | 59.4 | 56.9 | 1,304 | 58.3 | 845 | 56.6 | 1,416 | 60.5 | 1,196 | 57.5 | Okazaki et al, unpublished |
Hiatella arctica | NC_008451 | 18,244 | 66.4 | 3,968 | 65.8 | 61.8 | 63.4 | 72.2 | 1,447 | 67.0 | 901 | 63.0 | 1,472 | 67.0 | 614 | 66.1 | [48] |
Acanthocardia tuberculata | NC_008452 | 16,104 | 59.9 | 3,636 | 59.4 | 55.8 | 61.0 | 61.4 | 1,213 | 65.2 | 824 | 59.5 | 1,489 | 57.8 | 1,103 | 59.1 | [48] |
Venerupis philippinarum | NC_003354 | 22,676 | 69.7 | 4,211 | 68.5 | 62.2 | 63.0 | 68.1 | 1,408 | 72.8 | 1,249 | 70.6 | 1,459 | 69.2 | 2,183 | 68.2 | Okazaki et al, unpublished |
Meretrix petechialis | NC_012767 | 19,567 | 68.3 | 4,014 | 66.9 | 60.5 | 64.4 | 75.6 | 1,581 | 71.0 | 1,187 | 69.4 | 1,458 | 68.4 | 1,634 | 69.4 | [50] |
Mytilus galloprovincialis | NC_006886 | 16,744 | 61.8 | 3,733 | 60.5 | 56.0 | 62.1 | 63.3 | 1,244 | 65.6 | 947 | 64.2 | 1,517 | 66.7 | 1,157 | 60.2 | [46] |
Mytilus edulis | NC_006161 | 16,740 | 61.8 | 3,681 | 60.5 | 56.0 | 62.0 | 63.6 | 1,244 | 65.3 | 945 | 64.1 | 1,517 | 66.6 | 1,158 | 61.0 | [51] |
Mytilus trossulus | NC_007687 | 18,652 | 61.5 | 3,716 | 59.5 | 54.9 | 62.1 | 61.6 | 1,244 | 66.8 | 948 | 63.6 | 1,584 | 67.1 | 1,561 | 63.9 | [47] |
Placopecten magellanicus | NC_007234 | 32,115 | 55.7 | 3,742 | 55.7 | 54.3 | 58.1 | 54.6 | 1,387 | 58.0 | 970 | 52.9 | 2,294 | 50.1 | 3,112 | 60.4 | [42] |
Mizuhopecten yessoensis | NC_009081 | 20,414 | 55.2 | 3,763 | 55.5 | 53.3 | 58.2 | 54.9 | 1,424 | 57.8 | 961 | 50.6 | 1,079 | 49.4 | 1,528 | 59.9 | Sato et al, unpublished |
Argopecten irradians | DQ665851 | 16,211 | 57.3 | 3,681 | 57.0 | 52.7 | 58.5 | 59.6 | 1,292 | 59.5 | 904 | 56.8 | 1,365 | 52.5 | 1,038 | 63.6 | [52] |
Chlamys farreri | EF473269 | 20,789 | 58.7 | 3,737 | 58.9 | 55.2 | 58.4 | 63.1 | 1,479 | 58.3 | 953 | 52.4 | 1,415 | 50.5 | 3,859 | 63.7 | [52] |
Crassostrea virginica | NC_007175 | 17,244 | 61.1 | 3,696 | 60.1 | 55.0 | 60.5 | 64.7 | 1,469 | 63.7 | 989 | 57.2 | 1,567 | 61.8 | 832 | 65.7 | [23] |
Crassostrea gigas | EU672831 | 18,225 | 63.4 | 3,718 | 62.8 | 57.1 | 60.4 | 71.0 | 1,314 | 65.1 | 2,242 | 60.1 | 1,693 | 63.4 | 645 | 69.8 | This study |
Crassostrea angulata | NC_012648 | 18,225 | 63.1 | 3,717 | 62.4 | 57.0 | 60.3 | 69.8 | 1,315 | 65.2 | 2,244 | 60.1 | 1,691 | 63.3 | 643 | 69.5 | This study |
Crassostrea sikamea | NC_012649 | 18,243 | 63.4 | 3,717 | 62.7 | 57.1 | 60.1 | 70.9 | 1,314 | 64.8 | 2,232 | 60.2 | 1,694 | 63.4 | 655 | 71.5 | This study |
Crassostrea hongkongensis | NC_011518 | 18,622 | 65.3 | 3,701 | 64.5 | 58.3 | 60.0 | 75.3 | 1,317 | 64.8 | 2,264 | 61.6 | 1,704 | 64.6 | 608 | 77.6 | [25] |
Crassostrea ariakensis | NC_012650 | 18,414 | 62.9 | 3,699 | 62.5 | 57.0 | 60.3 | 70.3 | 1,318 | 63.7 | 2,253 | 59.4 | 1,698 | 63.1 | 716 | 67.4 | This study |