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Table 3 Shared single copy nuclear genes are a rich source of phylogenetic information.

From: Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryzaand their phylogenetic utility across various taxonomic levels

ATH Annotation # SEQ # NT # VAR PI >50 MP >50 ML
At2 g13360 AGT1 49 1203 703 51% 63% 65%
At3 g47810 MAIGO 1 91 573 359 49% 66% 73%
At2 g32520 dienelactone hydrolase family protein 73 721 536 64% 75% 81%
At3 g52300 ATPQ 129 519 395 62% 65% 66%
At5 g06360 Ribosomal protein S8e 51 780 449 47% 58% 58%
At5 g04600 RNA recognition motif (RRM)-containing protein 63 579 475 74% 68% 71%
At2 g21870 probable atp synthase 24 kda subunit, mitochondrial precursor 95 606 492 68% 78% 78%
At4 g33250 eukaryotic translation initiation factor 3 subunit 11 (eif3k) 60 662 453 59% 68% 66%
At4 g30010 fiber protein Fb15 129 251 217 77% 62% 63%
At1 g77710 Probable ubiquitin-fold modifier 1 precursor 143 254 202 55% 46% 45%
At4 g08230 glycine-rich protein 51 413 286 54% 60% 68%
At4 g31720 STG1, TAFII15 64 448 323 51% 63% 67%
At4 g37830 putative cytochrome c oxidase subunit VIa precursor 151 216 192 71% 43% 45%
At5 g47570 similar to hypothetical protein 25.t00006 [Brassica oleracea] 90 387 288 64% 58% 65%
At5 g23290 putative c-myc binding protein 69 404 289 64% 62% 69%
At1 g27530 expressed protein 60 525 332 51% 68% 71%
At3 g20390 Endoribonuclease L-PSP, putative 132 372 313 69% 70% 70%
At5 g63135 hypothetical protein 64 448 323 51% 65% 63%
  Concatenated alignment of 13 shared single copy genes 69 7701 5072 55% 81% 87%
  1. This table provides the following information about the 18 shared single copy genes that were used for phylogenetic analysis based on EST and finished cDNA sequences: the Arabidopsis thaliana locus ID (ATH); the TAIR annotation in Arabidopsis (Annotation); the number of sequences in the final alignment (# SEQ); the number of nucleotides in the final alignment (# NT); the number of variable characters in the final alignment (# VAR); the percentage of characters that are parsimony-informative (% PI); the percent of nodes in the MP bootstrap consensus trees that are supported in greater than 50% of the bootstrap replicates; the percent of nodes in the ML bootstrap consensus trees that are supported in greater than 50% of the bootstrap replicates.