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Table 2 The human hsp60 pseudogenes

From: Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes

Name1 Start2 End3 Str4 Chr5 Loc6 Ex7 P/D8 Ka/Ks9 LRT10 FS11 SC12 aa13
CCT1-1P 19,986,638 19,987,216 + 12 p12.2 1 P 0.75 0.16 5 2 190
CCT1-2P 41,621,756 41,623,646 - 5 p13.1 2? D 1.21 0.15 7 5 512
CCT1-3P14 42,801,030 42,802,033 + 7 p14.1 3 D 0.68 2.10 1 1 367
CCT3-1P 16,177,578 16,178,178 + 8 p22 1 P 1.02 0.0 2 2 159
CCT4-1P 64,177,578 64,409,590 + X q12 3 D 0.65 1.76 0 3 512
CCT4-2P 140,344,301 140,345,787 - 7 q34 4 D 0.82 1.24 2 10 278
CCT5-1P14,15 78,382,086 78,382,680 + 13 q31.1 1 P 0.81 0.20 3 4 549
CCT5-2P15 78,382,866 78,382,967 - 13 q31.1 1 ? - - - 1 34
CCT5-3P 114,876,388 114,877,290 + 5 q22.3 1 P 0.25 2.12 6 3 201
CCT6-1P 14,692,965 14,693,954 - 5 p15.2 1 P 1.00 0.0 2 2 330
CCT6-2P 109,013,584 109,014,117 - 11 q22.3 1 P 0.90 0.0 0 2 178
CCT6-3P16 64,162,812 64,171,325 + 7 q11.21 8 D 0.43 3.06 5 4 289
CCT6-4P 191,915,332 191,916,879 + 3 q28 1 P 0.57 6.90** 9 4 292
CCT6-5P14,16 64,853,564 64,865,440 + 7 q11.21 10 D 0.84 0.34 12 6 399
CCT7-1P14 92,251,627 92,307,366 - 5 q15 1 P 0.45 1.88 3 5 145
CCT7-2P 150,242,815 150,243,240 + 6 q25.1 1 P 0.87 0.10 3 4 552
CCT8-1P14 145,141,482 145,143,137 - 1 q21.1 1 P 1.14 0.10 2 3 561
HSPD1-1P14 135,744,902 135,745,039 - 5 q31.1 1 P 1.46 0.27 0 0 48
HSPD1-2P14,17 21,919,402 21,920,175 - 5 p14.3 1 P 0.90 0.10 1 1 264
HSPD1-3P 43,602,029 43,602,280 - 20 q13.12 4 D - - 0 1 84
HSPD1-4P 88,065,673 88,066,269 + 6 q15 1 P 0.55 1.08 4 5 199
HSPD1-5P14 55,191,053 55,192,769 + 12 q13.2 1 P 0.56 3.08 2 1 499
HSPD1-6P14 36,783,612 36,785,195 - 3 P22.3 1 P 0.59 2.46 2 2 443
HSPD1-7P18 7,263,938 7,265,475 + 8 p23.1 1 P 1.12 0.18 5 4 396
HSPD1-8P 145,986,418 145,987,946 + 4 q31.21 1 P 0.63 2.32 4 3 458
HSPD1-9P18 7,785,932 7,787,502 - 8 p23.1 1 P 0.91 0.08 5 3 416
HSPD1-10P 8,058,884 8,082,857 + 12 p13.31 2? D 0.78 0.94 1 1 307
HSPD1-11P 95,130,459 95,132,169 + 5 q15 5 D 0.74 2.44 6 6 375
HSPD1-12P 78,321,372 78,323,341 + 13 q31.1 1 P 0.62 4.98* 5 4 410
HSPD1-13P 153,068,626 153,068,943 + 6 q25.2 1 P 0.54 2.84 1 2 108
HSPD1-14P14 37,465,288 37,466,827 - 13 q13.3 4 D 0.68 3.3 6 3 361
HSPD1-15P 19,269,394 19,270,353 + 5 p14.3 4 D 0.74 1.24 4 4 241
HSPD1-16P 105,082,802 105,083,755 + 11 q22.3 2? D 0.51 6.24* 5 4 199
HSPD1-17P 34,077,070 34,078,293 + 1 p35.1 3 D 0.74 1.48 2 2 217
HSPD1-18P 56,105,684 56,108,736 + 20 q13.32 5 D 0.48 10.84** 3 2 299
HSPD1-19P 50,318,868 50,319,008 + 10 q11.23 1 ? 2.42 0.72 0 0 47
HSPD1-20P 78,924,341 78,924,478 - 12 q21.31 1 ? 0.40 3.08 0 0 46
HSPD1-21P 60,994,430 60,994,876 - 5 q12.1 6 D - - 0 6 155
HSPD1-22P 29,181,851 29,183,334 - 21 q21.3 2? D 0.69 1.4 3 4 344
  1. 1Pseudogene names follow the HUGO nomenclature. They are composed of the name of the parental gene followed by a unique number identifier and the suffix "P" (Pseudogene); 2Start and 3 End positions of the pseudogene on the chromosome; 4Strand; 5Chromosome; 6Location on the chromosome; 7Number of exons. A question mark indicates gene fragments with uncertain numbers of exons; 8Processed (P), duplicated (D) or undetermined (?); 9Ratio of non-synonymous vs. synonymous substitution rates; 10Likelihood Ratio Test (LRT) values. Values different from 1.0 with probability p < 0.01 (**) or p < 0.05 (*) are shown in bold-face; 11Number of Frame-Shifts recognized in the coding region of the pseudogene; 12Number of in-frame Stop Codons recognized in the coding region of the pseudogene; 13Length in amino acids of pseudo-translation of the recognized pseudogene sequence; 14Ten pseudogenes previously reported in the Ensembl (roman), Pseudogene.org (italics) or NCBI (bold) databases: CCT1-3P = OTTHUMG00000033751; CCT5-1P = Human.chr13.mb78; CCT6-5P = ENSP00000275603, Human.chr7.mb64; CCT7-1P = ENST00000399032; CCT8-1P = Human.chr1.mb145; HSPD1-1P = ENSG00000162241, Human.chr5.mb135; HSPD1-2P = ENSP00000328369; HSPD1-5P = LOC644745; HSPD1-6P = LOC645548; HSPD1-14P = OTTHUMG00000016753; 15,16,18Tandemly duplicated;17Previously identified as Hsp60s2 (Hsp60 short form 2).