Figure 5

Supermatrix tree of Carassius auratus with additional sequences. Maximum likelihood (ML) supermatrix tree generated using the best-scoring concatenated ML tree (Figure 4) as a backbone constraint. Accession numbers of the sequences are as follows: #1, DQ399917-19; #2, DQ399938; #3, DQ399930, DQ399932, DQ868879, EU186830; #4, DQ868876-78; #5, EF633624, EF633626, EF633633; #6, AB27415; #7, EF633617; #8, EF633622; #9, EF633625, EF633634; #10, EF633621, EF633627-32, EF633642, EF633646-80, AB377293-99, AB273316, AJ388413; #11, DQ399926; #12, DQ399927, DQ399933-34; #13, DQ399929, DQ399931, DQ399935-47, DQ399940; #14, EF633620; #15, EF633638; #16, EU754018-20; #17, EF633637; #18, EF633618-19, EF633623, EF633635-36, AB274414; #19, AB378296; #20, AB378293, AB378295, AB378298-99; #21, AB379916, AB379919, AB379923-29, AB379931-33, AB379935-41, AB379945-46, AB379948-50, AB379952, AB379957-58; #22, AB379930, AB379934, AB379942-44, AB379947, AB379951, AB379953-54, AB379956, AB379959; #23, AB379922. Numbers above the internal branches are bootstrap values, which are given only for the nodes of major clades. Haplotype numbers of concatenated sequences correspond to those in Figure 4. Haplotype numbers of newly added sequences are followed by the names of the regions of mitochondrial DNA sequences, locality, and number of sequences. Roman numerals on the right side of the tree denote clade code numbers.