Table 1 Summary of 28 LAB taxa and one outgroup (Bacillus subtilis)
From: Phylogenomic reconstruction of lactic acid bacteria: an update
Species-Organisms | Association | NCBI RefSeq |
|---|---|---|
Bacillus subtilis subsp. subtilis str. 168 | Outgroup | NC_000964 |
Enterococcus faecalis V583 | gastrointestinal tract bacteria | NC_004668 |
Lactobacillus acidophilus NCFM | gastrointestinal tract bacteria | NC_006814 |
Lactobacillus brevis ATCC 367 | other fermentation such as beer, wine, plants, or meat | NC_008497 |
Lactobacillus casei ATCC 334 | dairy fermentation | NC_008526 |
Lactobacillus casei BL23 | dairy fermentation | NC_010999 |
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 | dairy fermentation | NC_008054 |
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | dairy fermentation | NC_008529 |
Lactobacillus fermentum IFO 3956 | other fermentation such as beer, wine, plants, or meat | NC_010610 |
Lactobacillus gasseri ATCC 33323 | gastrointestinal tract bacteria | NC_008530 |
Lactobacillus helveticus DPC 4571 | dairy fermentation (Swiss cheese isolate) | NC_010080 |
Lactobacillus johnsonii NCC 533 | gastrointestinal tract bacteria | NC_005362 |
Lactobacillus plantarum WCFS1 | Human saliva (first), gut, dairy, wine, plants, or meat | NC_004567 |
Lactobacillus reuteri F275 | gastrointestinal tract bacteria | NC_009513 |
Lactobacillus reuteri JCM 1112 | gastrointestinal tract bacteria | NC_010609 |
Lactobacillus sakei subsp. sakei 23K | other fermentation such as beer, wine, plants, or meat | NC_007576 |
Lactobacillus salivarius UCC118 | gastrointestinal tract bacteria | NC_007929 |
Lactococcus lactis subsp. cremoris MG1363 | dairy fermentation | NC_009004 |
Lactococcus lactis subsp. cremoris SK11 | dairy fermentation | NC_008527 |
Lactococcus lactis subsp. lactis Il1403 | dairy fermentation | NC_002662 |
Leuconostoc citreum KM20 | other fermentation such as beer, wine, plants, or meat | NC_010471 |
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | other fermentation such as beer, wine, plants, or meat | NC_008531 |
Oenococcus oeni PSU-1 | other fermentation such as beer, wine, plants, or meat | NC_008528 |
Pediococcus pentosaceus ATCC 25745 | dairy fermentation | NC_008525 |
Streptococcus gordonii str. Challis substr. CH1 | human oral flora (dental plaque) | NC_009785 |
Streptococcus mutans UA159 | oral streptococci (leading cause of dental caries) | NC_004350 |
Streptococcus thermophilus CNRZ1066 | dairy fermentation | NC_006449 |
Streptococcus thermophilus LMD-9 | dairy fermentation | NC_008532 |