TY - JOUR AU - Green, B. R. AU - Durnford, D. G. PY - 1996 DA - 1996// TI - The chlorophyll-carotenoid proteins of oxygenic photosynthesis JO - Annu Rev Plant Physiol Plant Mol Biol VL - 47 UR - https://doi.org/10.1146/annurev.arplant.47.1.685 DO - 10.1146/annurev.arplant.47.1.685 ID - Green1996 ER - TY - JOUR AU - Koziol, A. AU - Borza, T. AU - Ishida, K. I. AU - Keeling, P. AU - Lee, R. W. AU - Durnford, D. G. PY - 2007 DA - 2007// TI - Tracing the evolution of the light-harvesting antennae in chlorophyll a/b-containing organisms JO - Plant Physiol VL - 143 UR - https://doi.org/10.1104/pp.106.092536 DO - 10.1104/pp.106.092536 ID - Koziol2007 ER - TY - CHAP AU - van Amerongen, H. AU - Dekker, J. P. ED - Green, B. R. ED - Parson, B. R. PY - 2003 DA - 2003// TI - Light-harvesting in photosystem II BT - Light-Harvesting Antennas in Photosynthesis ID - van Amerongen2003 ER - TY - CHAP AU - Fromme, P. AU - Schlodder, E. AU - Jansson, S. ED - Green, B. R. ED - Parson, B. R. PY - 2003 DA - 2003// TI - Structure and function of antenna system in photosystem I BT - Light-Harvesting Antennas in Photosynthesis ID - Fromme2003 ER - TY - JOUR AU - Cavalier-Smith, T. PY - 1999 DA - 1999// TI - Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree JO - J Eukaryot Microbiol VL - 46 UR - https://doi.org/10.1111/j.1550-7408.1999.tb04614.x DO - 10.1111/j.1550-7408.1999.tb04614.x ID - Cavalier-Smith1999 ER - TY - CHAP AU - Baurain, D. AU - Brinkmann, H. AU - Petersen, J. AU - Rodriguez-Ezpeleta, N. AU - Stechmann, A. AU - Demoulin, V. AU - Roger, A. J. AU - Burger, G. AU - Lang, B. F. AU - Philippe, H. PY - 2010 DA - 2010// TI - Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes and stramenopiles BT - Mol Biol Evol ID - Baurain2010 ER - TY - JOUR AU - Sanchez-Puerta, M. V. AU - Delwiche, C. F. PY - 2008 DA - 2008// TI - A Hypothesis for plastid evolution in chromalveolates JO - J Phycol VL - 44 UR - https://doi.org/10.1111/j.1529-8817.2008.00559.x DO - 10.1111/j.1529-8817.2008.00559.x ID - Sanchez-Puerta2008 ER - TY - JOUR AU - Delwiche, C. F. PY - 1999 DA - 1999// TI - Tracing the thread of plastid diversity through the tapestry of life JO - Am Nat VL - 154 UR - https://doi.org/10.1086/303291 DO - 10.1086/303291 ID - Delwiche1999 ER - TY - JOUR AU - Rodriguez-Ezpeleta, N. AU - Brinkmann, H. AU - Burey, S. C. AU - Roure, B. AU - Burger, G. AU - Loffelhardt, W. AU - Bohnert, H. J. AU - Philippe, H. AU - Lang, B. F. PY - 2005 DA - 2005// TI - Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes JO - Curr Biol VL - 15 UR - https://doi.org/10.1016/j.cub.2005.06.040 DO - 10.1016/j.cub.2005.06.040 ID - Rodriguez-Ezpeleta2005 ER - TY - CHAP AU - Delwiche, C. F. ED - Brodie, J. ED - Lewis, J. PY - 2007 DA - 2007// TI - Algae in the warp and weave of life: bound by plastids BT - Unravelling the algae: the past, present, and future of algal systematics Systematics Association Special Volume # 75 PB - Taylor and Francis CY - London ID - Delwiche2007 ER - TY - JOUR AU - Stiller, J. W. AU - Reel, D. C. AU - Johnson, J. C. PY - 2003 DA - 2003// TI - A single origin of plastids revisited: Convergent evolution in organellar genome content JO - J Phycol VL - 39 UR - https://doi.org/10.1046/j.1529-8817.2003.02070.x DO - 10.1046/j.1529-8817.2003.02070.x ID - Stiller2003 ER - TY - JOUR AU - Patron, N. J. AU - Inagaki, Y. AU - Keeling, P. J. PY - 2007 DA - 2007// TI - Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages JO - Curr Biol VL - 17 UR - https://doi.org/10.1016/j.cub.2007.03.069 DO - 10.1016/j.cub.2007.03.069 ID - Patron2007 ER - TY - JOUR AU - Hackett, J. D. AU - Yoon, H. S. AU - Li, S. AU - Reyes-Prieto, A. AU - Rummele, S. E. AU - Bhattacharya, D. PY - 2007 DA - 2007// TI - Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with Chromalveolates JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm089 DO - 10.1093/molbev/msm089 ID - Hackett2007 ER - TY - JOUR AU - Sanchez-Puerta, M. V. AU - Bachvaroff, T. R. AU - Delwiche, C. F. PY - 2007 DA - 2007// TI - Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids JO - Mol Phylogen Evol VL - 44 UR - https://doi.org/10.1016/j.ympev.2007.03.003 DO - 10.1016/j.ympev.2007.03.003 ID - Sanchez-Puerta2007 ER - TY - JOUR AU - Yoon, H. S. AU - Hackett, J. D. AU - Pinto, G. AU - Bhattacharya, D. PY - 2002 DA - 2002// TI - The single, ancient origin of chromist plastids JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.242379899 DO - 10.1073/pnas.242379899 ID - Yoon2002 ER - TY - JOUR AU - Bachvaroff, T. R. AU - Puerta, M. V. S. AU - Delwiche, C. F. PY - 2005 DA - 2005// TI - Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages JO - Mol Biol Evol VL - 22 UR - https://doi.org/10.1093/molbev/msi172 DO - 10.1093/molbev/msi172 ID - Bachvaroff2005 ER - TY - JOUR AU - Tengs, T. AU - Dahlberg, O. J. AU - Shalchian-Tabrizi, K. AU - Klaveness, D. AU - Rudi, K. AU - Delwiche, C. F. AU - Jakobsen, K. S. PY - 2000 DA - 2000// TI - Phylogenetic analyses indicate that the 19 ' hexanoyloxy-fucoxanthin-containing dinoflagellates have tertiary plastids of haptophyte origin JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026350 DO - 10.1093/oxfordjournals.molbev.a026350 ID - Tengs2000 ER - TY - JOUR AU - Moustafa, A. AU - Beszteri, B. AU - Maier, U. G. AU - Bowler, C. AU - Valentin, K. AU - Bhattacharya, D. PY - 2009 DA - 2009// TI - Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms JO - Science VL - 324 UR - https://doi.org/10.1126/science.1172983 DO - 10.1126/science.1172983 ID - Moustafa2009 ER - TY - JOUR AU - Green, B. R. AU - Pichersky, E. PY - 1994 DA - 1994// TI - Hypothesis for the evolution of 3-helix chl a/b and chl a/c light-harvesting antenna proteins from 2-helix and 4-helix ancestors JO - Photosynthesis Res VL - 39 UR - https://doi.org/10.1007/BF00029382 DO - 10.1007/BF00029382 ID - Green1994 ER - TY - JOUR AU - Liu, Z. F. AU - Yan, H. C. AU - Wang, K. B. AU - Kuang, T. Y. AU - Zhang, J. P. AU - Gui, L. L. AU - An, X. M. AU - Chang, W. R. PY - 2004 DA - 2004// TI - Crystal structure of spinach major light-harvesting complex at 2.72 angstrom resolution JO - Nature VL - 428 UR - https://doi.org/10.1038/nature02373 DO - 10.1038/nature02373 ID - Liu2004 ER - TY - JOUR AU - Standfuss, R. AU - van Scheltinga, A. C. T. AU - Lamborghini, M. AU - Kuhlbrandt, W. PY - 2005 DA - 2005// TI - Mechanisms of photoprotection and nonphotochemical quenching in pea light-harvesting complex at 2.5A resolution JO - EMBO J VL - 24 UR - https://doi.org/10.1038/sj.emboj.7600585 DO - 10.1038/sj.emboj.7600585 ID - Standfuss2005 ER - TY - JOUR AU - Beer, A. AU - Gundermann, K. AU - Beckmann, J. AU - Buchel, C. PY - 2006 DA - 2006// TI - Subunit composition and pigmentation of fucoxanthin-chlorophyll proteins in diatoms: Evidence for a subunit involved in diadinoxanthin and diatoxanthin binding JO - Biochemistry VL - 45 UR - https://doi.org/10.1021/bi061249h DO - 10.1021/bi061249h ID - Beer2006 ER - TY - JOUR AU - Buchel, C. PY - 2003 DA - 2003// TI - Fucoxanthin-chlorophyll proteins in diatoms: 18 and 19 kDa subunits assemble into different oligomeric states JO - Biochemistry VL - 42 UR - https://doi.org/10.1021/bi0349468 DO - 10.1021/bi0349468 ID - Buchel2003 ER - TY - CHAP AU - Mimuro, M. AU - Akimoto, S. ED - Larkum, A. W. D. ED - Douglas, S. E. PY - 2003 DA - 2003// TI - Carotenoids of light harvesting systems: Energy transfer processes from fucoxantin and peridinin to chlorophyll BT - Photosynthesis in Algae PB - Kluwer Academic Publishers CY - Raven JA UR - https://doi.org/10.1007/978-94-007-1038-2_15 DO - 10.1007/978-94-007-1038-2_15 ID - Mimuro2003 ER - TY - CHAP AU - Macpherson, A. N. AU - Hiller, R. G. ED - Green, B. R. ED - Parson, W. W. PY - 2003 DA - 2003// TI - Light-harvesting systems in chlorophyll c-containing algae BT - Light-Harvesting Antennas in Photosynthesis UR - https://doi.org/10.1007/978-94-017-2087-8_11 DO - 10.1007/978-94-017-2087-8_11 ID - Macpherson2003 ER - TY - JOUR AU - Grabowski, B. AU - Cunningham, F. X. AU - Gantt, E. PY - 2001 DA - 2001// TI - Chlorophyll and carotenoid binding in a simple red algal light-harvesting complex crosses phylogenetic lines JO - Proc Natl Acad Sci USA VL - 98 UR - https://doi.org/10.1073/pnas.031587198 DO - 10.1073/pnas.031587198 ID - Grabowski2001 ER - TY - JOUR AU - Polivka, T. AU - van Stokkum, I. H. M. AU - Zigmantas, D. AU - van Grondelle, R. AU - Sundstrom, V. AU - Hiller, R. G. PY - 2006 DA - 2006// TI - Energy transfer in the major intrinsic light-harvesting complex from Amphidinium carterae JO - Biochemistry VL - 45 UR - https://doi.org/10.1021/bi060265b DO - 10.1021/bi060265b ID - Polivka2006 ER - TY - JOUR AU - Lepetit, B. AU - Volke, D. AU - Szabo, M. AU - Hoffmann, R. AU - Garab, G. Z. AU - Wilhelm, C. AU - Goss, R. PY - 2007 DA - 2007// TI - Spectroscopic and molecular characterization of the oligomeric antenna of the diatom Phaeodactylum tricornutum JO - Biochemistry VL - 46 UR - https://doi.org/10.1021/bi7008344 DO - 10.1021/bi7008344 ID - Lepetit2007 ER - TY - JOUR AU - Durnford, D. G. AU - Deane, J. A. AU - Tan, S. AU - McFadden, G. I. AU - Gantt, E. AU - Green, B. R. PY - 1999 DA - 1999// TI - A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution JO - J Mol Evol VL - 48 UR - https://doi.org/10.1007/PL00006445 DO - 10.1007/PL00006445 ID - Durnford1999 ER - TY - JOUR AU - Eppard, M. AU - Krumbein, W. E. AU - von Haeseler, A. AU - Rhiel, E. PY - 2000 DA - 2000// TI - Characterization of fcp4 and fcp12, two additional genes encoding light harvesting proteins of Cyclotella cryptica (Bacillariophyceae) and phylogenetic analysis of this complex gene family JO - Plant Biol VL - 2 UR - https://doi.org/10.1055/s-2000-3702 DO - 10.1055/s-2000-3702 ID - Eppard2000 ER - TY - JOUR AU - Richard, C. AU - Ouellet, H. AU - Guertin, M. PY - 2000 DA - 2000// TI - Characterization of the LI818 polypeptide from the green unicellular alga Chlamydomonas reinhardtii JO - Plant Mol Biol VL - 42 UR - https://doi.org/10.1023/A:1006340308077 DO - 10.1023/A:1006340308077 ID - Richard2000 ER - TY - JOUR AU - Becker, F. AU - Rhiel, E. PY - 2006 DA - 2006// TI - Immuno-electron microscopic quantification of the fucoxanthin chlorophyll a/c binding polypeptides Fcp2, Fcp4, and Fcp6 of Cyclotella cryptica grown under low- and high-light intensities JO - Int Microbiol VL - 9 ID - Becker2006 ER - TY - JOUR AU - Janssen, M. AU - Bathke, L. AU - Marquardt, J. AU - Krumbein, W. E. AU - Rhiel, E. PY - 2001 DA - 2001// TI - Changes in the hot apparatus of diatoms in response to low and high light intensities JO - Int Microbiol VL - 4 ID - Janssen2001 ER - TY - JOUR AU - Oeltjen, A. AU - Krumbein, W. E. AU - Rhiel, E. PY - 2002 DA - 2002// TI - Investigations on transcript sizes, steady state mRNA concentrations and diurnal expression of genes encoding fucoxanthin chlorophyll a/c light harvesting polypeptides in the centric diatom Cyclotella cryptica JO - Plant Biol VL - 4 UR - https://doi.org/10.1055/s-2002-25737 DO - 10.1055/s-2002-25737 ID - Oeltjen2002 ER - TY - JOUR AU - Oeltjen, A. AU - Marquardt, J. AU - Rhiel, E. PY - 2004 DA - 2004// TI - Differential circadian expression of genes fcp2 and fcp6 in Cyclotella cryptica JO - Int Microbiol VL - 7 ID - Oeltjen2004 ER - TY - JOUR AU - Westermann, M. AU - Rhiel, E. PY - 2005 DA - 2005// TI - Localisation of fucoxanthin chlorophyll a/c-binding polypeptides of the centric diatom Cyclotella cryptica by immuno-electron microscopy JO - Protoplasma VL - 225 UR - https://doi.org/10.1007/s00709-005-0083-9 DO - 10.1007/s00709-005-0083-9 ID - Westermann2005 ER - TY - JOUR AU - Guindon, S. AU - Gascuel, O. PY - 2003 DA - 2003// TI - A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood JO - Syst Biol VL - 52 UR - https://doi.org/10.1080/10635150390235520 DO - 10.1080/10635150390235520 ID - Guindon2003 ER - TY - CHAP AU - Zwickl, D. J. PY - 2006 DA - 2006// BT - Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion PB - The University of Texas CY - Austin ID - Zwickl2006 ER - TY - JOUR AU - Ronquist, F. AU - Huelsenbeck, J. P. PY - 2003 DA - 2003// TI - MrBayes 3: Bayesian phylogenetic inference under mixed models JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg180 DO - 10.1093/bioinformatics/btg180 ID - Ronquist2003 ER - TY - JOUR AU - Huelsenbeck, J. P. PY - 1995 DA - 1995// TI - Performance of phylogenetic method in simulation JO - Syst Biol VL - 44 UR - https://doi.org/10.1093/sysbio/44.1.17 DO - 10.1093/sysbio/44.1.17 ID - Huelsenbeck1995 ER - TY - JOUR AU - Zwickl, D. J. AU - Hillis, D. M. PY - 2002 DA - 2002// TI - Increased taxon sampling greatly reduces phylogenetic error JO - Syst Biol VL - 51 UR - https://doi.org/10.1080/10635150290102339 DO - 10.1080/10635150290102339 ID - Zwickl2002 ER - TY - CHAP AU - Palmer, J. D. AU - Delwiche, C. F. ED - Soltis, D. E. ED - Soltis, P. S. ED - Doyle, J. J. PY - 1998 DA - 1998// TI - The origin and evolution of plastids and their genomes BT - Molecular Systematics of Plants II PB - Kluwer Academic Publishers CY - Boston UR - https://doi.org/10.1007/978-1-4615-5419-6_13 DO - 10.1007/978-1-4615-5419-6_13 ID - Palmer1998 ER - TY - JOUR AU - Johnson, M. D. AU - Oldach, D. AU - Delwiche, C. F. AU - Stoecker, D. K. PY - 2007 DA - 2007// TI - Retention of transcriptionally active cryptophyte nuclei by the ciliate Myrionecta rubra JO - Nature VL - 445 UR - https://doi.org/10.1038/nature05496 DO - 10.1038/nature05496 ID - Johnson2007 ER - TY - JOUR AU - Durnford, D. G. AU - Aebersold, R. AU - Green, B. R. PY - 1996 DA - 1996// TI - The fucoxanthin-chlorophyll proteins from a chromophyte alga are part of a large multigene family: Structural and evolutionary relationships to other light harvesting antennae JO - Mol Gen Genet VL - 253 UR - https://doi.org/10.1007/s004380050334 DO - 10.1007/s004380050334 ID - Durnford1996 ER - TY - JOUR AU - Caron, L. AU - Douady, D. AU - Quinetszely, M. AU - deGoer, S. AU - Berkaloff, C. PY - 1996 DA - 1996// TI - Gene structure of a chlorophyll a/c-binding protein from a brown alga: Presence of an intron and phylogenetic implications JO - J Mol Evol VL - 43 UR - https://doi.org/10.1007/BF02338835 DO - 10.1007/BF02338835 ID - Caron1996 ER - TY - JOUR AU - Deane, J. A. AU - Fraunholz, M. AU - Su, V. AU - Maier, U. G. AU - Martin, W. AU - Durnford, D. G. AU - McFadden, G. I. PY - 2000 DA - 2000// TI - Evidence for nucleomorph to host nucleus gene transfer: Light-harvesting complex proteins from cryptomonads and chlorarachniophytes JO - Protist VL - 151 UR - https://doi.org/10.1078/1434-4610-00022 DO - 10.1078/1434-4610-00022 ID - Deane2000 ER - TY - CHAP AU - Green, B. R. ED - Green, B. R. ED - Parson, B. R. PY - 2003 DA - 2003// TI - The evolution of light-harvesting antennas BT - Light-Harvesting Antennas in Photosynthesis UR - https://doi.org/10.1007/978-94-017-2087-8 DO - 10.1007/978-94-017-2087-8 ID - Green2003 ER - TY - JOUR AU - Armbrust, E. V. AU - Berges, J. A. AU - Bowler, C. AU - Green, B. R. AU - Martinez, D. AU - Putnam, N. H. AU - Zhou, S. G. AU - Allen, A. E. AU - Apt, K. E. AU - Bechner, M. PY - 2004 DA - 2004// TI - The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism JO - Science VL - 306 UR - https://doi.org/10.1126/science.1101156 DO - 10.1126/science.1101156 ID - Armbrust2004 ER - TY - JOUR AU - Bowler, C. AU - Allen, A. E. AU - Badger, J. H. AU - Grimwood, J. AU - Jabbari, K. AU - Kuo, A. AU - Maheswari, U. AU - Martens, C. AU - Maumus, F. AU - Otillar, R. P. PY - 2008 DA - 2008// TI - The Phaeodactylum genome reveals the evolutionary history of diatom genomes JO - Nature VL - 456 UR - https://doi.org/10.1038/nature07410 DO - 10.1038/nature07410 ID - Bowler2008 ER - TY - JOUR AU - Apt, K. E. AU - Clendennen, S. K. AU - Powers, D. A. AU - Grossman, A. R. PY - 1995 DA - 1995// TI - The gene family encoding the fucoxanthin chlorophyll proteins from the brown alga Macrocystis pyrifera JO - Mol Gen Genet VL - 246 UR - https://doi.org/10.1007/BF00290449 DO - 10.1007/BF00290449 ID - Apt1995 ER - TY - JOUR AU - Kroth-Pancic, P. G. PY - 1995 DA - 1995// TI - Nucleotide sequence of 2 cDNAs encoding fucoxanthin chlorophyll a/c proteins in the diatom Odontella sinensis JO - Plant Mol Biol VL - 27 UR - https://doi.org/10.1007/BF00020236 DO - 10.1007/BF00020236 ID - Kroth-Pancic1995 ER - TY - JOUR AU - Smith, G. J. AU - Gao, Y. AU - Alberte, R. S. PY - 1997 DA - 1997// TI - The fucoxanthin-chlorophyll a/c proteins comprise a large family of coexpressed genes in the marine diatom Skeletonema costatum (Greve) JO - Plant Physiol VL - 114 ID - Smith1997 ER - TY - JOUR AU - Matsuzaki, M. AU - Misumi, O. AU - Shin-I, T. AU - Maruyama, S. AU - Takahara, M. AU - Miyagishima, S. Y. AU - Mori, T. AU - Nishida, K. AU - Yagisawa, F. AU - Nishida, K. PY - 2004 DA - 2004// TI - Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D JO - Nature VL - 428 UR - https://doi.org/10.1038/nature02398 DO - 10.1038/nature02398 ID - Matsuzaki2004 ER - TY - JOUR AU - Toplin, J. A. AU - Norris, T. B. AU - Lehr, C. R. AU - McDermott, T. R. AU - Castenholz, R. W. PY - 2008 DA - 2008// TI - Biogeographic and Phylogenetic Diversity of Thermoacidophilic Cyanidiales in Yellowstone National Park, Japan, and New Zealand JO - Appl Environ Microbiol VL - 74 UR - https://doi.org/10.1128/AEM.02741-07 DO - 10.1128/AEM.02741-07 ID - Toplin2008 ER - TY - JOUR AU - Claudia, C. AU - Hwan Su, Y. AU - Antonino, P. AU - Gabriele, P. AU - Debashish, B. PY - 2004 DA - 2004// TI - Hidden biodiversity of the extremophilic Cyanidiales red algae JO - Mol Ecol VL - 13 UR - https://doi.org/10.1111/j.1365-294X.2004.02180.x DO - 10.1111/j.1365-294X.2004.02180.x ID - Claudia2004 ER - TY - JOUR AU - Grossman, A. R. AU - Schaefer, M. R. AU - Chiang, G. G. AU - Collier, J. L. PY - 1993 DA - 1993// TI - The phycobilisome, a light-harvesting complex responsive to environmental conditions JO - Microbiol Rev VL - 57 ID - Grossman1993 ER - TY - JOUR AU - Muller, P. AU - Li, X. P. AU - Niyogi, K. K. PY - 2001 DA - 2001// TI - Non-photochemical quenching. A response to excess light energy JO - Plant Physiol VL - 125 UR - https://doi.org/10.1104/pp.125.4.1558 DO - 10.1104/pp.125.4.1558 ID - Muller2001 ER - TY - JOUR AU - Pearson, G. A. AU - Hoarau, G. AU - Lago-Leston, A. AU - Coyer, J. A. AU - Kube, M. AU - Reinhardt, R. AU - Henckel, K. AU - Serrao, E. T. A. AU - Corre, E. AU - Olsen, J. L. PY - 2010 DA - 2010// TI - An Expressed Sequence Tag Analysis of the Intertidal Brown Seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in Response to Abiotic Stressors JO - Mar Biotechnol VL - 12 UR - https://doi.org/10.1007/s10126-009-9208-z DO - 10.1007/s10126-009-9208-z ID - Pearson2010 ER - TY - JOUR AU - Dittami, S. M. AU - Michel, G. AU - Collen, J. AU - Boyen, C. AU - Tonon, T. PY - 2010 DA - 2010// TI - Chlorophyll-binding proteins revisited- a multigenic family of light-harvesting and stress proteins from a brown algal perspective JO - BMC Evol Biol VL - 10 UR - https://doi.org/10.1186/1471-2148-10-365 DO - 10.1186/1471-2148-10-365 ID - Dittami2010 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. H. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - CHAP AU - Bailey, T. L. AU - Elkan, C. PY - 1994 DA - 1994// TI - Fitting a mixture model by expectation maximization to discover motifs in biopolymers BT - Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology: 1994 PB - AAAI Press CY - Menlo Park, California ID - Bailey1994 ER - TY - JOUR AU - Bailey, T. L. AU - Gribskov, M. PY - 1998 DA - 1998// TI - Combining evidence using p-values: application to sequence homology searches JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.1.48 DO - 10.1093/bioinformatics/14.1.48 ID - Bailey1998 ER - TY - JOUR AU - de la Espina, S. M. D. AU - Alverca, E. AU - Cuadrado, A. AU - Franca, S. PY - 2005 DA - 2005// TI - Organization of the genome and gene expression in a nuclear environment lacking histones and nucleosomes: the amazing dinoflagellates JO - Eur J Cell Biol VL - 84 UR - https://doi.org/10.1016/j.ejcb.2005.01.002 DO - 10.1016/j.ejcb.2005.01.002 ID - de la Espina2005 ER - TY - JOUR AU - Hiller, R. G. AU - Wrench, P. M. AU - Sharples, F. P. PY - 1995 DA - 1995// TI - The light-harvesting chlorophyll a\c-binding protein of dinoflagellates - a putative polyprotein JO - FEBS Lett VL - 363 UR - https://doi.org/10.1016/0014-5793(95)00297-M DO - 10.1016/0014-5793(95)00297-M ID - Hiller1995 ER - TY - JOUR AU - Koziol, A. G. AU - Durnford, D. G. PY - 2008 DA - 2008// TI - Euglena light-harvesting complexes are encoded by multifarious polyprotein mRNAs that evolve in concert JO - Mol Biol Evol VL - 25 UR - https://doi.org/10.1093/molbev/msm232 DO - 10.1093/molbev/msm232 ID - Koziol2008 ER - TY - JOUR AU - Stajich, J. E. AU - Block, D. AU - Boulez, K. AU - Brenner, S. E. AU - Chervitz, S. A. AU - Dagdigian, C. AU - Fuellen, G. AU - Gilbert, J. G. R. AU - Korf, I. AU - Lapp, H. PY - 2002 DA - 2002// TI - The bioperl toolkit: Perl modules for the life sciences JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.361602 DO - 10.1101/gr.361602 ID - Stajich2002 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - Clustal-W - Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Bininda-Emonds, O. R. P. PY - 2005 DA - 2005// TI - transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences JO - BMC Bioinformatics VL - 22 UR - https://doi.org/10.1186/1471-2105-6-156 DO - 10.1186/1471-2105-6-156 ID - Bininda-Emonds2005 ER - TY - CHAP AU - Nylander, J. A. A. PY - 2004 DA - 2004// TI - MrModeltest v2.2 BT - Evolutionary Biology Centre, Uppsala University ID - Nylander2004 ER - TY - JOUR AU - Abascal, F. AU - Zardoya, R. AU - Posada, D. PY - 2005 DA - 2005// TI - ProtTest: selection of best-fit models of protein evolution JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti263 DO - 10.1093/bioinformatics/bti263 ID - Abascal2005 ER - TY - JOUR AU - Jansson, S. AU - Green, B. AU - Grossman, A. R. AU - Hiller, R. PY - 1999 DA - 1999// TI - A proposal for extending the nomenclature of light-harvesting proteins of the three transmembrane helix type JO - Plant Molecular Biology Reporter VL - 17 UR - https://doi.org/10.1023/A:1007620508007 DO - 10.1023/A:1007620508007 ID - Jansson1999 ER - TY - JOUR AU - Gagne, G. AU - Guertin, M. PY - 1992 DA - 1992// TI - The early genetic response to light in the green unicellular alga Chlamydomonas eugametos grown under light dark cycles involves genes that represent direct responses to light and photosynthesis JO - Plant Mol Biol VL - 18 UR - https://doi.org/10.1007/BF00040659 DO - 10.1007/BF00040659 ID - Gagne1992 ER -