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Table 5 Polymorphism statistics for 8 candidate cis-regulatory regions in 18 Lake Malawi cichlid species

From: Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes

Opsin

Length (bp)

S 1

s2

H3

Ï€4

C5

T D 6

CRX7

SWS1

1000

16

5

17

0.0020

0.983

-1.4424

1

SWS2B

694

2

1

3

0.0008

0.997

0.2951

0

SWS2A

1000

7

1

6

0.0010

0.992

-1.1518

2

RH2B

950

17

3

15

0.0022

0.982

-1.1050

2

LWS

956

12

2

11

0.0012

0.987

-1.2394

0

CNE 10

882

12

1

10

0.0021

0.986

-0.2311

0

SWS2B UTR

442

2

0

4

0.0013

0.995

0.4486

NA

LWS UTR*

436

1

0

2

0.0006

0.998

0.0298

NA

  1. 1 Total number of segregating sites
  2. 2 Total number of segregating sites that are singletons
  3. 3 Total number of haplotypes
  4. 4 Nucleotide diversity
  5. 5 Sequence conservation
  6. 6 Tajima's D
  7. 7 Total number of segregating sites that interrupt predicted CRX binding sites
  8. * Statistics presented for in/del polymorphism
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BMC Ecology and Evolution

ISSN: 2730-7182

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