Skip to main content

Table 2 d N /d S (ω) ratios and likelihood ratio tests (LRT) for ERV genes in the family Suidae to test whether ω for internal branches are significantly less than 1.

From: Evolution of endogenous retroviruses in the Suidae: evidence for different viral subpopulations in African and Eurasian host species

 

Two-ratio model

   

Gene

Internal

branches (ω)

Terminal

branches (ω)

â„“1

â„“0

LRT1

gag

0.34

0.78

-3235.42

-3253.27

38**

pol

0.25

0.56

-5373.26

-5405.94

65**

env (class A)

0.30

1.04

-4271.15

-4306.51

70**

env (class B)

0.22

1.47

-2470.67

-2515.98

90**

  1. â„“ = loge-likelihood
  2. 1 LRT = Likelihood ratio test, twice the difference of the log likelihoods[2Δℓ = 2(ℓ1-ℓ0)]
  3. ** Extremely significant (P < 0.01; χ12)