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Table 2 Results from mismatch distribution and neutrality tests for cytb mtDNA phylogroups and for the β-fibint 7 nuclear gene.

From: Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones

 

Mismatch Distribution

Neutrality tests

 

Spatial genetic structure

Sudden-expansion model

Spatial-expansion model

 

Locus

Phylogroup

χ2

p

p (SDD)

p (hg)

p (SDD)

p (hg)

D

p

Fs

p

R2

p

 

L1

73.78

<0.01

0.49

0.67

0.34

0.63

-1.78

0.04

-2.67

0.04

0.12

0.18

 

L2

358.07

0.24

0.15

0.29

0.31

0.36

-1.72

0.02

-9.92

0.00

0.05

0.00

Cytb

L3

754.10

<0.01

0.13

0.22

0.28

0.46

-1.18

0.10

-7.06

0.00

0.07

0.09

 

L4

3494.93

0.09

0.92

0.67

0.95

0.70

-2.35

0.00

-26.33

0.00

0.02

0.00

 

L5

946.18

<0.01

0.10

0.09

0.33

0.33

-2.17

0.00

-26.66

0.00

0.03

0.00

 

N

105.14

0.03

0.68

0.78

0.86

0.87

-2.00

0.01

-3.90

0.01

0.06

0.00

β-Fib (a)

...

148.25

0.02

0.76

0.96

0.58

0.85

-1.69

0.01

-18.52

0.00

0.04

0.02

β-Fib (b)

...

-

-

0.74

0.78

0.60

0.81

-1.73

0.01

-18.67

0.00

0.08

0.00

  1. (p(SDD) = sum of square deviations; p(hg) = Harpending's raggedness index; Tajima's D (D) and respective p value; Fu's Fs test (Fs) and respective p value; Ramos-Onsis R2 (R2) and respective p value). Statistics that do not suggest range expansion are shown in bold font. Results for the spatial genetic structure estimated with Geodi s are also shown. Statistics that do not show evidence for spatial genetic structure are shown in italic font.
  2. (a) Dataset using haplotypes inferred by Phase with probability threshold > 0.60 (208 haplotypes)
  3. (b) Reduced dataset using haplotypes inferred by Phase with probability threshold > 0.90 (192 haplotypes)