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Table 2 Results from mismatch distribution and neutrality tests for cytb mtDNA phylogroups and for the β-fibint 7 nuclear gene.

From: Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones

  Mismatch Distribution Neutrality tests
  Spatial genetic structure Sudden-expansion model Spatial-expansion model  
Locus Phylogroup χ2 p p (SDD) p (hg) p (SDD) p (hg) D p Fs p R2 p
  L1 73.78 <0.01 0.49 0.67 0.34 0.63 -1.78 0.04 -2.67 0.04 0.12 0.18
  L2 358.07 0.24 0.15 0.29 0.31 0.36 -1.72 0.02 -9.92 0.00 0.05 0.00
Cytb L3 754.10 <0.01 0.13 0.22 0.28 0.46 -1.18 0.10 -7.06 0.00 0.07 0.09
  L4 3494.93 0.09 0.92 0.67 0.95 0.70 -2.35 0.00 -26.33 0.00 0.02 0.00
  L5 946.18 <0.01 0.10 0.09 0.33 0.33 -2.17 0.00 -26.66 0.00 0.03 0.00
  N 105.14 0.03 0.68 0.78 0.86 0.87 -2.00 0.01 -3.90 0.01 0.06 0.00
β-Fib (a) ... 148.25 0.02 0.76 0.96 0.58 0.85 -1.69 0.01 -18.52 0.00 0.04 0.02
β-Fib (b) ... - - 0.74 0.78 0.60 0.81 -1.73 0.01 -18.67 0.00 0.08 0.00
  1. (p(SDD) = sum of square deviations; p(hg) = Harpending's raggedness index; Tajima's D (D) and respective p value; Fu's Fs test (Fs) and respective p value; Ramos-Onsis R2 (R2) and respective p value). Statistics that do not suggest range expansion are shown in bold font. Results for the spatial genetic structure estimated with Geodi s are also shown. Statistics that do not show evidence for spatial genetic structure are shown in italic font.
  2. (a) Dataset using haplotypes inferred by Phase with probability threshold > 0.60 (208 haplotypes)
  3. (b) Reduced dataset using haplotypes inferred by Phase with probability threshold > 0.90 (192 haplotypes)