TY - JOUR AU - Cleaver, O. AU - Krieg, P. A. PY - 2001 DA - 2001// TI - Notochord patterning of the endoderm JO - Dev Biol VL - 234 UR - https://doi.org/10.1006/dbio.2001.0214 DO - 10.1006/dbio.2001.0214 ID - Cleaver2001 ER - TY - JOUR AU - Stemple, D. L. PY - 2005 DA - 2005// TI - Structure and function of the notochord: an essential organ for chordate development JO - Development VL - 132 UR - https://doi.org/10.1242/dev.01812 DO - 10.1242/dev.01812 ID - Stemple2005 ER - TY - JOUR AU - Fujiwara, S. AU - Maeda, Y. AU - Shin, I. T. AU - Kohara, Y. AU - Takatori, N. AU - Satou, Y. AU - Satoh, N. PY - 2002 DA - 2002// TI - Gene expression profiles in Ciona intestinalis cleavage-stage embryos JO - Mech Dev VL - 112 UR - https://doi.org/10.1016/S0925-4773(01)00651-7 DO - 10.1016/S0925-4773(01)00651-7 ID - Fujiwara2002 ER - TY - JOUR AU - Jiang, D. AU - Smith, W. C. PY - 2007 DA - 2007// TI - Ascidian notochord morphogenesis JO - Dev Dyn VL - 236 UR - https://doi.org/10.1002/dvdy.21184 DO - 10.1002/dvdy.21184 ID - Jiang2007 ER - TY - JOUR AU - Passamaneck, Y. J. AU - Di Gregorio, A. PY - 2005 DA - 2005// TI - Ciona intestinalis: chordate development made simple JO - Dev Dyn VL - 233 UR - https://doi.org/10.1002/dvdy.20300 DO - 10.1002/dvdy.20300 ID - Passamaneck2005 ER - TY - JOUR AU - Satoh, N. AU - Satou, Y. AU - Davidson, B. AU - Levine, M. PY - 2003 DA - 2003// TI - Ciona intestinalis: an emerging model for whole-genome analyses JO - Trends Genet VL - 19 UR - https://doi.org/10.1016/S0168-9525(03)00144-6 DO - 10.1016/S0168-9525(03)00144-6 ID - Satoh2003 ER - TY - JOUR AU - Kawai, N. AU - Takahashi, H. AU - Nishida, H. AU - Yokosawa, H. PY - 2005 DA - 2005// TI - Regulation of NF-kappaB/Rel by IkappaB is essential for ascidian notochord formation JO - Dev Biol VL - 277 UR - https://doi.org/10.1016/j.ydbio.2004.09.007 DO - 10.1016/j.ydbio.2004.09.007 ID - Kawai2005 ER - TY - JOUR AU - Matsumoto, J. AU - Kumano, G. AU - Nishida, H. PY - 2007 DA - 2007// TI - Direct activation by Ets and Zic is required for initial expression of the Brachyury gene in the ascidian notochord JO - Dev Biol VL - 306 UR - https://doi.org/10.1016/j.ydbio.2007.03.034 DO - 10.1016/j.ydbio.2007.03.034 ID - Matsumoto2007 ER - TY - JOUR AU - Nishida, H. PY - 2008 DA - 2008// TI - Development of the appendicularian Oikopleura dioica: culture, genome, and cell lineages JO - Dev Growth Differ VL - 50 UR - https://doi.org/10.1111/j.1440-169X.2008.01035.x DO - 10.1111/j.1440-169X.2008.01035.x ID - Nishida2008 ER - TY - JOUR AU - Corbo, J. C. AU - Levine, M. AU - Zeller, R. W. PY - 1997 DA - 1997// TI - Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis JO - Development VL - 124 ID - Corbo1997 ER - TY - JOUR AU - Di Gregorio, A. AU - Corbo, J. C. AU - Levine, M. PY - 2001 DA - 2001// TI - The regulation of forkhead/HNF-3beta expression in the Ciona embryo JO - Dev Biol VL - 229 UR - https://doi.org/10.1006/dbio.2000.9964 DO - 10.1006/dbio.2000.9964 ID - Di Gregorio2001 ER - TY - JOUR AU - Dunn, M. P. AU - Di Gregorio, A. PY - 2009 DA - 2009// TI - The evolutionarily conserved leprecan gene: its regulation by Brachyury and its role in the developing Ciona notochord JO - Dev Biol VL - 328 UR - https://doi.org/10.1016/j.ydbio.2009.02.007 DO - 10.1016/j.ydbio.2009.02.007 ID - Dunn2009 ER - TY - JOUR AU - Kugler, J. E. AU - Passamaneck, Y. J. AU - Feldman, T. G. AU - Beh, J. AU - Regnier, T. W. AU - Di Gregorio, A. PY - 2008 DA - 2008// TI - Evolutionary conservation of vertebrate notochord genes in the ascidian Ciona intestinalis JO - Genesis VL - 46 UR - https://doi.org/10.1002/dvg.20403 DO - 10.1002/dvg.20403 ID - Kugler2008 ER - TY - JOUR AU - Passamaneck, Y. J. AU - Katikala, L. AU - Perrone, L. AU - Dunn, M. P. AU - Oda-Ishii, I. AU - Di Gregorio, A. PY - 2009 DA - 2009// TI - Direct activation of a notochord cis-regulatory module by Brachyury and FoxA in the ascidian Ciona intestinalis JO - Development VL - 136 UR - https://doi.org/10.1242/dev.038141 DO - 10.1242/dev.038141 ID - Passamaneck2009 ER - TY - JOUR AU - Capellini, T. D. AU - Dunn, M. P. AU - Passamaneck, Y. J. AU - Selleri, L. AU - Di Gregorio, A. PY - 2008 DA - 2008// TI - Conservation of notochord gene expression across chordates: insights from the Leprecan gene family JO - Genesis VL - 46 UR - https://doi.org/10.1002/dvg.20406 DO - 10.1002/dvg.20406 ID - Capellini2008 ER - TY - JOUR AU - Suzuki, M. M. AU - Satoh, N. PY - 2000 DA - 2000// TI - Genes expressed in the amphioxus notochord revealed by EST analysis JO - Dev Biol VL - 224 UR - https://doi.org/10.1006/dbio.2000.9796 DO - 10.1006/dbio.2000.9796 ID - Suzuki2000 ER - TY - JOUR AU - Urano, A. AU - Suzuki, M. M. AU - Zhang, P. AU - Satoh, N. AU - Satoh, G. PY - 2003 DA - 2003// TI - Expression of muscle-related genes and two MyoD genes during amphioxus notochord development JO - Evol Dev VL - 5 UR - https://doi.org/10.1046/j.1525-142X.2003.03051.x DO - 10.1046/j.1525-142X.2003.03051.x ID - Urano2003 ER - TY - JOUR AU - Holland, P. W. AU - Koschorz, B. AU - Holland, L. Z. AU - Herrmann, B. G. PY - 1995 DA - 1995// TI - Conservation of Brachyury (T) genes in amphioxus and vertebrates: developmental and evolutionary implications JO - Development VL - 121 ID - Holland1995 ER - TY - JOUR AU - Shimeld, S. M. PY - 1997 DA - 1997// TI - Characterisation of amphioxus HNF-3 genes: conserved expression in the notochord and floor plate JO - Dev Biol VL - 183 UR - https://doi.org/10.1006/dbio.1996.8481 DO - 10.1006/dbio.1996.8481 ID - Shimeld1997 ER - TY - JOUR AU - Hudson, C. AU - Yasuo, H. PY - 2006 DA - 2006// TI - A signalling relay involving Nodal and Delta ligands acts during secondary notochord induction in Ciona embryos JO - Development VL - 133 UR - https://doi.org/10.1242/dev.02466 DO - 10.1242/dev.02466 ID - Hudson2006 ER - TY - JOUR AU - Lemaire, P. PY - 2009 DA - 2009// TI - Unfolding a chordate developmental program, one cell at a time: invariant cell lineages, short-range inductions and evolutionary plasticity in ascidians JO - Dev Biol VL - 332 UR - https://doi.org/10.1016/j.ydbio.2009.05.540 DO - 10.1016/j.ydbio.2009.05.540 ID - Lemaire2009 ER - TY - JOUR AU - Seo, H. C. AU - Kube, M. AU - Edvardsen, R. B. AU - Jensen, M. F. AU - Beck, A. AU - Spriet, E. AU - Gorsky, G. AU - Thompson, E. M. AU - Lehrach, H. AU - Reinhardt, R. AU - Chourrout, D. PY - 2001 DA - 2001// TI - Miniature genome in the marine chordate Oikopleura dioica JO - Science VL - 294 UR - https://doi.org/10.1126/science.294.5551.2506 DO - 10.1126/science.294.5551.2506 ID - Seo2001 ER - TY - JOUR AU - Bouquet, J. M. AU - Spriet, E. AU - Troedsson, C. AU - Ottera, H. AU - Chourrout, D. AU - Thompson, E. M. PY - 2009 DA - 2009// TI - Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica JO - J Plankton Res VL - 31 UR - https://doi.org/10.1093/plankt/fbn132 DO - 10.1093/plankt/fbn132 ID - Bouquet2009 ER - TY - JOUR AU - Stach, T. AU - Winter, J. AU - Bouquet, J. M. AU - Chourrout, D. AU - Schnabel, R. PY - 2008 DA - 2008// TI - Embryology of a planktonic tunicate reveals traces of sessility JO - Proc Natl Acad Sci USA VL - 105 UR - https://doi.org/10.1073/pnas.0710196105 DO - 10.1073/pnas.0710196105 ID - Stach2008 ER - TY - CHAP AU - Satoh, N. PY - 1994 DA - 1994// BT - Developmental biology of ascidians PB - Cambridge University Press CY - Cambridge England; New York ID - Satoh1994 ER - TY - JOUR AU - Deschet, K. AU - Nakatani, Y. AU - Smith, W. C. PY - 2003 DA - 2003// TI - Generation of Ci-Brachyury-GFP stable transgenic lines in the ascidian Ciona savignyi JO - Genesis VL - 35 UR - https://doi.org/10.1002/gene.10195 DO - 10.1002/gene.10195 ID - Deschet2003 ER - TY - JOUR AU - Soviknes, A. M. AU - Glover, J. C. PY - 2008 DA - 2008// TI - Continued growth and cell proliferation into adulthood in the notochord of the appendicularian Oikopleura dioica JO - Biol Bull VL - 214 UR - https://doi.org/10.2307/25066656 DO - 10.2307/25066656 ID - Soviknes2008 ER - TY - JOUR AU - Ikuta, T. AU - Yoshida, N. AU - Satoh, N. AU - Saiga, H. PY - 2004 DA - 2004// TI - Ciona intestinalisHox gene cluster: Its dispersed structure and residual colinear expression in development JO - Proc Natl Acad Sci USA VL - 101 UR - https://doi.org/10.1073/pnas.0401389101 DO - 10.1073/pnas.0401389101 ID - Ikuta2004 ER - TY - JOUR AU - Seo, H. C. AU - Edvardsen, R. B. AU - Maeland, A. D. AU - Bjordal, M. AU - Jensen, M. F. AU - Hansen, A. AU - Flaat, M. AU - Weissenbach, J. AU - Lehrach, H. AU - Wincker, P. AU - Reinhardt, R. AU - Chourrout, D. PY - 2004 DA - 2004// TI - Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica JO - Nature VL - 431 UR - https://doi.org/10.1038/nature02709 DO - 10.1038/nature02709 ID - Seo2004 ER - TY - JOUR AU - Bassham, S. AU - Postlethwait, J. PY - 2000 DA - 2000// TI - Brachyury (T) expression in embryos of a larvacean urochordate, Oikopleura dioica, and the ancestral role of T JO - Dev Biol VL - 220 UR - https://doi.org/10.1006/dbio.2000.9647 DO - 10.1006/dbio.2000.9647 ID - Bassham2000 ER - TY - JOUR AU - Kispert, A. AU - Hermann, B. G. PY - 1993 DA - 1993// TI - The Brachyury gene encodes a novel DNA binding protein JO - EMBO J VL - 12 ID - Kispert1993 ER - TY - JOUR AU - Chiba, S. AU - Jiang, D. AU - Satoh, N. AU - Smith, W. C. PY - 2009 DA - 2009// TI - Brachyury null mutant-induced defects in juvenile ascidian endodermal organs JO - Development VL - 136 UR - https://doi.org/10.1242/dev.030981 DO - 10.1242/dev.030981 ID - Chiba2009 ER - TY - JOUR AU - Hotta, K. AU - Takahashi, H. AU - Satoh, N. AU - Gojobori, T. PY - 2008 DA - 2008// TI - Brachyury-downstream gene sets in a chordate, Ciona intestinalis: integrating notochord specification, morphogenesis and chordate evolution JO - Evol Dev VL - 10 UR - https://doi.org/10.1111/j.1525-142X.2007.00212.x DO - 10.1111/j.1525-142X.2007.00212.x ID - Hotta2008 ER - TY - JOUR AU - Di Gregorio, A. AU - Levine, M. PY - 1999 DA - 1999// TI - Regulation of Ci-tropomyosin-like, a Brachyury target gene in the ascidian, Ciona intestinalis JO - Development VL - 126 ID - Di Gregorio1999 ER - TY - JOUR AU - Bork, P. AU - Dandekar, T. AU - Diaz-Lazcoz, Y. AU - Eisenhaber, F. AU - Huynen, M. AU - Yuan, Y. PY - 1998 DA - 1998// TI - Predicting function: from genes to genomes and back JO - J Mol Biol VL - 283 UR - https://doi.org/10.1006/jmbi.1998.2144 DO - 10.1006/jmbi.1998.2144 ID - Bork1998 ER - TY - JOUR AU - Tatusov, R. L. AU - Koonin, E. V. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - A genomic perspective on protein families JO - Science VL - 278 UR - https://doi.org/10.1126/science.278.5338.631 DO - 10.1126/science.278.5338.631 ID - Tatusov1997 ER - TY - JOUR AU - Denoeud, F. AU - Henriet, S. AU - Mungpakdee, S. AU - Aury, J. M. AU - Da Silva, C. AU - Brinkmann, H. AU - Mikhaleva, J. AU - Olsen, L. C. AU - Jubin, C. AU - Canestro, C. PY - 2010 DA - 2010// TI - Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate JO - Science VL - 330 UR - https://doi.org/10.1126/science.1194167 DO - 10.1126/science.1194167 ID - Denoeud2010 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Satou, Y. AU - Mineta, K. AU - Ogasawara, M. AU - Sasakura, Y. AU - Shoguchi, E. AU - Ueno, K. AU - Yamada, L. AU - Matsumoto, J. AU - Wasserscheid, J. AU - Dewar, K. AU - Wiley, G. B. AU - Macmil, S. L. AU - Roe, B. A. AU - Zeller, R. W. AU - Hastings, K. E. AU - Lemaire, P. AU - Lindquist, E. AU - Endo, T. AU - Hotta, K. AU - Inaba, K. PY - 2008 DA - 2008// TI - Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations JO - Genome Biol VL - 9 UR - https://doi.org/10.1186/gb-2008-9-10-r152 DO - 10.1186/gb-2008-9-10-r152 ID - Satou2008 ER - TY - JOUR AU - Wennerberg, K. AU - Der, C. J. PY - 2004 DA - 2004// TI - Rho-family GTPases: it's not only Rac and Rho (and I like it) JO - J Cell Sci VL - 117 UR - https://doi.org/10.1242/jcs.01118 DO - 10.1242/jcs.01118 ID - Wennerberg2004 ER - TY - JOUR AU - Davis-Smyth, T. AU - Duncan, R. C. AU - Zheng, T. AU - Michelotti, G. AU - Levens, D. PY - 1996 DA - 1996// TI - The far upstream element-binding proteins comprise an ancient family of single-strand DNA-binding transactivators JO - J Biol Chem VL - 271 UR - https://doi.org/10.1074/jbc.271.49.31679 DO - 10.1074/jbc.271.49.31679 ID - Davis-Smyth1996 ER - TY - JOUR AU - Dreyfuss, G. AU - Kim, V. N. AU - Kataoka, N. PY - 2002 DA - 2002// TI - Messenger-RNA-binding proteins and the messages they carry JO - Nat Rev Mol Cell Biol VL - 3 UR - https://doi.org/10.1038/nrm760 DO - 10.1038/nrm760 ID - Dreyfuss2002 ER - TY - JOUR AU - Honore, B. AU - Vorum, H. PY - 2000 DA - 2000// TI - The CREC family, a novel family of multiple EF-hand, low-affinity Ca(2+)-binding proteins localised to the secretory pathway of mammalian cells JO - FEBS Lett VL - 466 UR - https://doi.org/10.1016/S0014-5793(99)01780-9 DO - 10.1016/S0014-5793(99)01780-9 ID - Honore2000 ER - TY - JOUR AU - Kugler, J. E. AU - Gazdoiu, S. AU - Oda-Ishii, I. AU - Passamaneck, Y. J. AU - Erives, A. J. AU - Di Gregorio, A. PY - 2010 DA - 2010// TI - Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis JO - J Cell Sci VL - 123 UR - https://doi.org/10.1242/jcs.066910 DO - 10.1242/jcs.066910 ID - Kugler2010 ER - TY - JOUR AU - Soviknes, A. M. AU - Glover, J. C. PY - 2007 DA - 2007// TI - Spatiotemporal patterns of neurogenesis in the appendicularian Oikopleura dioica JO - Dev Biol VL - 311 UR - https://doi.org/10.1016/j.ydbio.2007.08.058 DO - 10.1016/j.ydbio.2007.08.058 ID - Soviknes2007 ER - TY - JOUR AU - Veeman, M. T. AU - Nakatani, Y. AU - Hendrickson, C. AU - Ericson, V. AU - Lin, C. AU - Smith, W. C. PY - 2008 DA - 2008// TI - Chongmague reveals an essential role for laminin-mediated boundary formation in chordate convergence and extension movements JO - Development VL - 135 UR - https://doi.org/10.1242/dev.010892 DO - 10.1242/dev.010892 ID - Veeman2008 ER - TY - JOUR AU - Parsons, M. J. AU - Pollard, S. M. AU - Saude, L. AU - Feldman, B. AU - Coutinho, P. AU - Hirst, E. M. AU - Stemple, D. L. PY - 2002 DA - 2002// TI - Zebrafish mutants identify an essential role for laminins in notochord formation JO - Development VL - 129 ID - Parsons2002 ER - TY - JOUR AU - Jiang, D. AU - Munro, E. M. AU - Smith, W. C. PY - 2005 DA - 2005// TI - Ascidian prickle regulates both mediolateral and anterior-posterior cell polarity of notochord cells JO - Curr Biol VL - 15 UR - https://doi.org/10.1016/j.cub.2004.12.041 DO - 10.1016/j.cub.2004.12.041 ID - Jiang2005 ER - TY - JOUR AU - Hotta, K. AU - Yamada, S. AU - Ueno, N. AU - Satoh, N. AU - Takahashi, H. PY - 2007 DA - 2007// TI - Brachyury-downstream notochord genes and convergent extension in Ciona intestinalis embryos JO - Dev Growth Differ VL - 49 UR - https://doi.org/10.1111/j.1440-169X.2007.00935.x DO - 10.1111/j.1440-169X.2007.00935.x ID - Hotta2007 ER - TY - STD TI - Fehon RG, McClatchey AI, Bretscher A: Organizing the cell cortex: the role of ERM proteins. Nat Rev Mol Cell Biol. 11 (4): 276-287. 10.1038/nrm2866. ID - ref50 ER - TY - JOUR AU - Zorn, A. M. AU - Krieg, P. A. PY - 1997 DA - 1997// TI - The KH domain protein encoded by quaking functions as a dimer and is essential for notochord development in Xenopus embryos JO - Genes Dev VL - 11 UR - https://doi.org/10.1101/gad.11.17.2176 DO - 10.1101/gad.11.17.2176 ID - Zorn1997 ER - TY - JOUR AU - Yamashiro, S. AU - Noguchi, T. AU - Mabuchi, I. PY - 2003 DA - 2003// TI - Localization of two IQGAPs in cultured cells and early embryos of Xenopus laevis JO - Cell Motil Cytoskeleton VL - 55 UR - https://doi.org/10.1002/cm.10109 DO - 10.1002/cm.10109 ID - Yamashiro2003 ER - TY - JOUR AU - Kennedy, T. E. AU - Serafini, T. AU - de la Torre, J. R. AU - Tessier-Lavigne, M. PY - 1994 DA - 1994// TI - Netrins are diffusible chemotropic factors for commissural axons in the embryonic spinal cord JO - Cell VL - 78 UR - https://doi.org/10.1016/0092-8674(94)90421-9 DO - 10.1016/0092-8674(94)90421-9 ID - Kennedy1994 ER - TY - JOUR AU - Hotta, K. AU - Takahashi, H. AU - Asakura, T. AU - Saitoh, B. AU - Takatori, N. AU - Satou, Y. AU - Satoh, N. PY - 2000 DA - 2000// TI - Characterization of Brachyury-downstream notochord genes in the Ciona intestinalis embryo JO - Dev Biol VL - 224 UR - https://doi.org/10.1006/dbio.2000.9765 DO - 10.1006/dbio.2000.9765 ID - Hotta2000 ER - TY - JOUR AU - Oda-Ishii, I. AU - Di Gregorio, A. PY - 2007 DA - 2007// TI - Lineage-independent mosaic expression and regulation of the Ciona multidom gene in the ancestral notochord JO - Dev Dyn VL - 236 UR - https://doi.org/10.1002/dvdy.21213 DO - 10.1002/dvdy.21213 ID - Oda-Ishii2007 ER - TY - JOUR AU - Shimeld, S. PY - 2000 DA - 2000// TI - An amphioxus netrin gene is expressed in midline structures during embryonic and larval development JO - Dev Genes Evol VL - 210 UR - https://doi.org/10.1007/s004270000073 DO - 10.1007/s004270000073 ID - Shimeld2000 ER - TY - JOUR AU - Flood, P. P. PY - 1975 DA - 1975// TI - Scanning electron microscope observations on the muscle innervation of Oikopleura dioica Fol (Appendicularia, Tunicata) with notes on the arrangement of connective tissue fibres JO - Cell Tissue Res VL - 164 UR - https://doi.org/10.1007/BF00223014 DO - 10.1007/BF00223014 ID - Flood1975 ER - TY - JOUR AU - Soviknes, A. M. AU - Chourrout, D. AU - Glover, J. C. PY - 2007 DA - 2007// TI - Development of the caudal nerve cord, motoneurons, and muscle innervation in the appendicularian urochordate Oikopleura dioica JO - J Comp Neurol VL - 503 UR - https://doi.org/10.1002/cne.21376 DO - 10.1002/cne.21376 ID - Soviknes2007 ER - TY - JOUR AU - Takahashi, H. AU - Hotta, K. AU - Erives, A. AU - Di Gregorio, A. AU - Zeller, R. W. AU - Levine, M. AU - Satoh, N. PY - 1999 DA - 1999// TI - Brachyury downstream notochord differentiation in the ascidian embryo JO - Genes Dev VL - 13 UR - https://doi.org/10.1101/gad.13.12.1519 DO - 10.1101/gad.13.12.1519 ID - Takahashi1999 ER - TY - STD TI - Kugler JE, Gazdoiu S, Oda-Ishii I, Passamaneck YJ, Erives AJ, Di Gregorio A: Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis. J Cell Sci. 123 (Pt 14): 2453-2463. ID - ref60 ER - TY - JOUR AU - Wada, H. AU - Okuyama, M. AU - Satoh, N. AU - Zhang, S. PY - 2006 DA - 2006// TI - Molecular evolution of fibrillar collagen in chordates, with implications for the evolution of vertebrate skeletons and chordate phylogeny JO - Evol Dev VL - 8 UR - https://doi.org/10.1111/j.1525-142X.2006.00109.x DO - 10.1111/j.1525-142X.2006.00109.x ID - Wada2006 ER - TY - JOUR AU - Rychel, A. L. AU - Swalla, B. J. PY - 2007 DA - 2007// TI - Development and evolution of chordate cartilage JO - J Exp Zool B Mol Dev Evol VL - 308 UR - https://doi.org/10.1002/jez.b.21157 DO - 10.1002/jez.b.21157 ID - Rychel2007 ER - TY - JOUR AU - Di Gregorio, A. AU - Levine, M. PY - 2002 DA - 2002// TI - Analyzing gene regulation in ascidian embryos: new tools for new perspectives JO - Differentiation VL - 70 UR - https://doi.org/10.1046/j.1432-0436.2002.700402.x DO - 10.1046/j.1432-0436.2002.700402.x ID - Di Gregorio2002 ER - TY - JOUR AU - Canestro, C. AU - Postlethwait, J. H. PY - 2007 DA - 2007// TI - Development of a chordate anterior-posterior axis without classical retinoic acid signaling JO - Dev Biol VL - 305 UR - https://doi.org/10.1016/j.ydbio.2007.02.032 DO - 10.1016/j.ydbio.2007.02.032 ID - Canestro2007 ER - TY - JOUR AU - Blair, J. E. AU - Shah, P. AU - Hedges, S. B. PY - 2005 DA - 2005// TI - Evolutionary sequence analysis of complete eukaryote genomes JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-53 DO - 10.1186/1471-2105-6-53 ID - Blair2005 ER - TY - JOUR AU - Dehal, P. AU - Satou, Y. AU - Campbell, R. K. AU - Chapman, J. AU - Degnan, B. AU - De Tomaso, A. AU - Davidson, B. AU - Di Gregorio, A. AU - Gelpke, M. AU - Goodstein, D. M. PY - 2002 DA - 2002// TI - The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins JO - Science VL - 298 UR - https://doi.org/10.1126/science.1080049 DO - 10.1126/science.1080049 ID - Dehal2002 ER - TY - JOUR AU - Takatori, N. AU - Satou, Y. AU - Satoh, N. PY - 2002 DA - 2002// TI - Expression of hedgehog genes in Ciona intestinalis embryos JO - Mech Dev VL - 116 UR - https://doi.org/10.1016/S0925-4773(02)00150-8 DO - 10.1016/S0925-4773(02)00150-8 ID - Takatori2002 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT JO - Nucleic Acids Symposium Series VL - 41 ID - Hall1999 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Gascuel, O. PY - 1997 DA - 1997// TI - BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data JO - Mol Biol Evol VL - 14 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025808 DO - 10.1093/oxfordjournals.molbev.a025808 ID - Gascuel1997 ER - TY - JOUR AU - Tamura, K. AU - Dudley, J. AU - Nei, M. AU - Kumar, S. PY - 2007 DA - 2007// TI - MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm092 DO - 10.1093/molbev/msm092 ID - Tamura2007 ER - TY - STD TI - Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O: Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008, W465-469. 10.1093/nar/gkn180. 36 Web Server ID - ref72 ER - TY - JOUR AU - Huelsenbeck, J. P. AU - Ronquist, F. PY - 2001 DA - 2001// TI - MRBAYES: Bayesian inference of phylogenetic trees JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.8.754 DO - 10.1093/bioinformatics/17.8.754 ID - Huelsenbeck2001 ER - TY - JOUR AU - Ronquist, F. AU - Huelsenbeck, J. P. PY - 2003 DA - 2003// TI - MrBayes 3: Bayesian phylogenetic inference under mixed models JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg180 DO - 10.1093/bioinformatics/btg180 ID - Ronquist2003 ER - TY - JOUR AU - Burge, C. AU - Karlin, S. PY - 1997 DA - 1997// TI - Prediction of complete gene structures in human genomic DNA JO - J Mol Biol VL - 268 UR - https://doi.org/10.1006/jmbi.1997.0951 DO - 10.1006/jmbi.1997.0951 ID - Burge1997 ER - TY - JOUR AU - Henikoff, S. AU - Henikoff, J. G. PY - 1992 DA - 1992// TI - Amino acid substitution matrices from protein blocks JO - Proc Natl Acad Sci USA VL - 89 UR - https://doi.org/10.1073/pnas.89.22.10915 DO - 10.1073/pnas.89.22.10915 ID - Henikoff1992 ER -