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Table 2 Pfam domains in HGT candidates

From: Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects

Accession ID Description N Enrichment p-value
PF00078.20 Reverse transcriptase (RNA-dependent DNA polymerase) 58 14.0× <10-49
PF03372.16 Endonuclease/Exonuclease/phosphatase family 27 18.8× <10-26
PF00096.19 Zinc finger, C2H2 type 14 5.1× <10-5
PF00067.15 Cytochrome P450 11 2.5× <0.01
PF00069.18 Protein kinase domain 9 0.9× 1
PF07714.10 Protein tyrosine kinase 9 1.0× 0.9
PF00097.18 Zinc finger, C3HC4 type (RING finger) 8 3.1× <0.01
PF00089.19 Trypsin 6 6.4× <0.01
PF08036.4 Diapausin family of antimicrobial peptide 6 38.3× <10-8
PF08953.4 Domain of unknown function (DUF1899) 6 25.6× <10-6
PF00076.15 RNA recognition motif (RRM) 5 1.6× 0.3
PF00644.13 Poly(ADP-ribose) polymerase catalytic domain 5 24.0× <10-5
PF00856.21 SET domain 5 5.8× <0.01
PF03732.10 Retrotransposon gag protein 5 24.0× <10-5
PF12171.1 Zinc-finger double-stranded RNA-binding 5 3.8× <0.05
PF00092.21 von Willebrand factor type A domain 4 3.2× 0.06
PF00106.18 short chain dehydrogenase 4 1.4× 0.4
PF00178.15 Ets-domain 4 8.5× <0.01
PF00005.20 ABC transporter 3 1.4× 0.6
PF00098.16 Zinc knuckle 3 3.7× <0.05
  1. The 20 most abundant Pfam domains (e-value <0.001) in 509 HGT candidates defined by cross-species homology are shown. Enrichments factors and FDR corrected p-values were calculated relative to all P. pacificus genes with annotated PFAM domains.