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Table 2 Positively-selected codon positions in the Lagomorpha TRIM5α deduced protein sequences

From: Study of Sylvilagusrabbit TRIM5α species-specific domain: how ancient endoviruses could have shaped the antiviral repertoire in Lagomorpha

Codona Normalized E [dN-dS] Posterior
Probability
Bayes
Factor
Region Orcub Leeu Legr Syba Ocpr
3 0.30 1.00 795 - S0 S0 S0 A 0 S0
148 0.29 0.99 224 CC N0/K+ N0 N0 H0/+ K+
196 0.29 0.99 179 CC E- G 0 G 0 E- M 0
279 0.30 1.00 1913 - I 0 T0 I 0 I 0 A 0
288 0.29 0.99 178 - M 0 V 0 V 0 M 0 N0
327 0.30 1.00 6611 v1 H0/+/Q0 Q0 Q0 K+ F 0
329 0.30 1.00 578 v1 R+ H0/+ H0/+ Q0 G 0
330 0.30 1.00 35572 v1 L 0 G 0 G 0 P 0 N0
331 0.30 0.99 405 v1 N0 S0 S0 S0 V 0
332 0.30 1.00 33711 v1 L 0 L 0 L 0 F 0 S0
334 0.30 1.00 5055 v1 S0 L 0 L 0 P 0 G 0
336 0.30 0.99 294 v1 S0 K+ K+ N0 K+
341 0.30 1.00 483 v1 F 0 C 0 C 0 R+ L 0
342 0.30 1.00 574 v1 R+ Q0 Q0 Q0 T0
347 0.30 0.99 320 v1 T0 I 0 I 0 T0 L 0
348 0.30 1.00 691 v1 R+ K+ K+ G 0 T0
391 0.30 1.00 3822 v2 T0 I 0 I 0 T0 Q0
396 0.30 0.99 438 v2 Y0 Y0 Y0 F 0 P 0
399 0.30 0.99 368 v2 V 0 F 0 F 0 A 0 G 0
415 0.28 0.98 134 v3 I 0 N0 N0 N0 G 0
434 0.30 0.99 432 v3 P 0 P 0 P 0 L 0 S0
457 0.29 0.99 217 - K+ T0 T0 K+ V 0
464 0.30 0.99 416 - S0 S0 S0 A 0 S0
469 0.30 0.99 418 - S0 A 0 A 0 S0 S0
480 0.30 1.00 639 - H0/+ Q0 Q0 Q0 T0
  1. European rabbit (Orcu), European brown hare (Leeu), Iberian hare (Legr), brush rabbit (Syba) and American pika (Ocpr).
  2. a Codon positions are numbered according to the alignment in Figure 1.
  3. b Single amino acid = same for both Orcu subspecies, Oryctolagus cuniculus cuniculus (Orcucu) and Oryctolagus cuniculus algirus (Orcual); Two amino acids divided by "/" = Orcucu amino acid/Orcual amino acid
  4. Codon physical-chemical properties are also represented: Underlined codon = non-polar amino acid; non-underlined codon = polar amino acid; + = positive amino acid; - = negative amino acid; 0 = neutral amino-acid.