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Table 2 Genetic variation within the 82 bp sequenced region in modern tissue of known species and unknown variants in fossil material.

From: Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics

Taxonomic ID [Genbank Number]

Mutations

Fagaceae [HQ333118] â–³

                

American Beech 1

 

G

G

C

A

A

T

A

A

G

G

T

T

G

C

G

Chestnut

 

G

G

C

A

A

T

A

A

G

G

T

T

G

C

G

Red oak

 

G

G

C

A

A

T

A

A

G

G

T

T

G

C

G

Northern Pin Oak

 

G

G

C

A

A

T

A

A

G

G

T

T

G

C

G

Pin Oak

 

G

G

C

A

A

T

A

A

G

G

T

T

G

C

G

Black Oak

 

G

G

C

A

A

T

A

A

G

G

T

T

G

C

G

American Beech 2 [HQ333119] +

 

G

G

C

A

A

T

A

C

G

G

T

T

G

C

G

Sapindaceae [HQ333120] ×

                

Red Maple

 

G

G

C

A

A

T

A

A

A

G

T

T

G

T

G

Sugar Maple

 

G

G

C

A

A

T

A

A

A

G

T

T

G

T

G

Betulaceae [HQ333117] â—‹

                

Yellow Birch

 

G

G

C

A

A

T

A

A

G

G

T

T

G

A

A

Paper Birch

 

G

G

C

A

A

T

A

A

G

G

T

T

G

A

A

Black Birch

 

G

G

C

A

A

T

A

A

G

G

T

T

G

A

A

UNKNOWN 1 [HQ333121] â–½

*

G

A

C

A

A

T

A

A

C

G

T

T

G

T

G

UNKNOWN 2 [HQ333122] â—‡

*

G

G

T

A

A

T

A

A

G

G

T

T

G

A

A

UNKNOWN 3 [HQ333123] â–¡

 

G

G

C

A

A

A

A

A

G

G

A

T

G

A

G

UNKNOWN 4 [HQ333124] ✴

*

G

G

C

A

A

T

A

A

A

G

T

T

G

A

A

UNKNOWN 5 [HQ333125]

 

G

G

:

:

:

:

:

:

G

G

T

T

G

C

G

UNKNOWN 6 [HQ333126]

*

G

G

C

A

A

T

A

A

G

G

T

T

A

A

A

UNKNOWN 7 [HQ333127] ✡

*

A

G

C

A

A

T

A

A

G

G

T

T

G

A

A

UNKNOWN 8 [HQ333128] ⊞

*

G

G

C

A

A

T

A

A

G

A

T

T

G

A

A

UNKNOWN 9 [HQ333129] ⊗

 

G

G

C

A

A

T

A

A

G

G

T

:

G

A

A

UNKNOWN 10 [HQ333130]

*

G

G

C

A

A

T

A

A

A

G

T

:

G

A

A

UNKNOWN 11 [HQ333131] â– 

*

G

A

C

A

A

T

A

A

G

G

T

T

G

A

A

UNKNOWN 12 [HQ333132] â—†

*

G

G

C

A

A

T

A

A

A

G

T

T

G

C

G

  1. Mutations are in bold. Symbols correspond with Figures 5 and 6. Asterisks indicate mutations that are consistent with potential DNA damage.