TY - JOUR AU - Hannenhalli, S. AU - Kaestner, K. H. PY - 2009 DA - 2009// TI - The evolution of Fox genes and their role in development and disease JO - Nat Rev Genet VL - 10 UR - https://doi.org/10.1038/nrg2523 DO - 10.1038/nrg2523 ID - Hannenhalli2009 ER - TY - JOUR AU - Zannini, M. AU - Avantaggiato, V. AU - Biffali, E. AU - Arnone, M. I. AU - Sato, K. AU - Pischetola, M. AU - Taylor, B. A. AU - Phillips, S. J. AU - Simeone, A. AU - Di Lauro, R. PY - 1997 DA - 1997// TI - TTF-2, a new forkhead protein, shows a temporal expression in the developing thyroid which is consistent with a role in controlling the onset of differentiation JO - EMBO J VL - 16 UR - https://doi.org/10.1093/emboj/16.11.3185 DO - 10.1093/emboj/16.11.3185 ID - Zannini1997 ER - TY - JOUR AU - Perrone, L. AU - Pasca di Magliano, M. AU - Zannini, M. AU - Di Lauro, R. PY - 2000 DA - 2000// TI - The thyroid transcription factor 2 (TTF-2) is a promoter-specific DNA-binding independent transcriptional repressor JO - Biochem Biophys Res Commun VL - 275 UR - https://doi.org/10.1006/bbrc.2000.3232 DO - 10.1006/bbrc.2000.3232 ID - Perrone2000 ER - TY - JOUR AU - Dathan, N. AU - Parlato, R. AU - Rosica, A. AU - De Felice, M. AU - Di Lauro, R. PY - 2002 DA - 2002// TI - Distribution of the titf2/foxe1 gene product is consistent with an important role in the development of foregut endoderm, palate, and hair JO - Dev Dyn VL - 224 UR - https://doi.org/10.1002/dvdy.10118 DO - 10.1002/dvdy.10118 ID - Dathan2002 ER - TY - JOUR AU - Eichberger, T. AU - Regl, G. AU - Ikram, M. S. AU - Neill, G. W. AU - Philpott, M. P. AU - Aberger, F. AU - Frischauf, A. M. PY - 2004 DA - 2004// TI - FOXE1, a new transcriptional target of GLI2 is expressed in human epidermis and basal cell carcinoma. 2004 JO - J Invest Dermatol VL - 122 UR - https://doi.org/10.1111/j.0022-202X.2004.22505.x DO - 10.1111/j.0022-202X.2004.22505.x ID - Eichberger2004 ER - TY - JOUR AU - Brancaccio, A. AU - Minichiello A Grachtchouk, M. AU - Antonini, D. AU - Sheng, H. AU - Parlato, R. AU - Dathan, N. AU - Dlugosz, A. A. AU - Missero, C. PY - 2004 DA - 2004// TI - Requirement of the forkhead gene Foxe1, a target of sonic hedgehog signaling, in hair follicle morphogenesis JO - Hum Mol Genet VL - 13 UR - https://doi.org/10.1093/hmg/ddh292 DO - 10.1093/hmg/ddh292 ID - Brancaccio2004 ER - TY - JOUR AU - De Felice, M. AU - Ovitt, C. AU - Biffali, E. AU - Rodriguez-Mallon, A. AU - Arra, C. AU - Anastassiadis, K. AU - Macchia, P. E. AU - Mattei, M. G. AU - Mariano, A. AU - Schöler, H. AU - Macchia, V. AU - Di Lauro, R. PY - 1998 DA - 1998// TI - A mouse model for hereditary thyroid dysgenesis and cleft palate JO - Nat Genet VL - 19 UR - https://doi.org/10.1038/1289 DO - 10.1038/1289 ID - De Felice1998 ER - TY - JOUR AU - Clifton-Bligh, R. J. AU - Wentworth, J. M. AU - Heinz, P. AU - Crisp, M. S. AU - John, R. AU - Lazarus, J. H. AU - Ludgate, M. AU - Chatterjee, V. K. PY - 1998 DA - 1998// TI - Mutation of the gene encoding human TTF-2 associated with thyroid agenesis, cleft palate and choanal atresia JO - Nat Genet VL - 19 UR - https://doi.org/10.1038/1294 DO - 10.1038/1294 ID - Clifton-Bligh1998 ER - TY - JOUR AU - El-Hodiri, H. M. AU - Seufert, D. W. AU - Nekkalapudi, S. AU - Prescott, N. L. AU - Kelly, L. E. AU - Jamrich, M. PY - 2005 DA - 2005// TI - Xenopus laevis FoxE1 is primarily expressed in the developing pituitary and thyroid JO - Int J Dev Biol VL - 49 UR - https://doi.org/10.1387/ijdb.052011he DO - 10.1387/ijdb.052011he ID - El-Hodiri2005 ER - TY - JOUR AU - Nakada, C. AU - Iida, A. AU - Tabata, Y. AU - Watanabe, S. PY - 2009 DA - 2009// TI - Forkhead transcription factor foxe1 regulates chondrogenesis in zebrafish JO - Zool B Mol Dev Evol VL - 312 UR - https://doi.org/10.1002/jez.b.21298 DO - 10.1002/jez.b.21298 ID - Nakada2009 ER - TY - JOUR AU - Dodgson, J. B. AU - Delany, M. E. AU - Cheng, H. H. PY - 2011 DA - 2011// TI - Poultry Genome Sequences: Progress and Outstanding Challenges JO - Cytogenet Genome Res VL - 134 UR - https://doi.org/10.1159/000324413 DO - 10.1159/000324413 ID - Dodgson2011 ER - TY - JOUR AU - Graves, J. A. PY - 2009 DA - 2009// TI - Sex determination: Birds do it with a Z gene JO - Nature VL - 461 UR - https://doi.org/10.1038/461177a DO - 10.1038/461177a ID - Graves2009 ER - TY - JOUR AU - Nanda, I. AU - Zend-Ajusch, E. AU - Shan, Z. AU - Grützner, F. AU - Schartl, M. AU - Burt, D. W. AU - Koehler, M. AU - Fowler, V. M. AU - Goodwin, G. AU - Schneider, W. J. AU - Mizuno, S. AU - Dechant, G. AU - Haaf, T. AU - Schmid, M. PY - 2000 DA - 2000// TI - Conserved synteny between the chicken Z sex chromosome and human chromosome 9 includes the male regulatory gene DMRT1: a comparative (re)view on avian sex determination JO - Cytogenetics and Cell Genetics VL - 89 UR - https://doi.org/10.1159/000015567 DO - 10.1159/000015567 ID - Nanda2000 ER - TY - JOUR AU - Hamburger, V. AU - Hamilton, H. L. PY - 1992 DA - 1992// TI - A series of normal stages in the development of the chick embryo. 1951 JO - Dev Dyn VL - 195 UR - https://doi.org/10.1002/aja.1001950404 DO - 10.1002/aja.1001950404 ID - Hamburger1992 ER - TY - JOUR AU - Smuts, M. S. AU - Hilfer, S. R. AU - Searls, R. L. PY - 1978 DA - 1978// TI - Patterns of cellular proliferation during thyroid organogenesis JO - J Embryol Exp Morphol VL - 48 ID - Smuts1978 ER - TY - JOUR AU - Yatskievych, T. A. AU - Pascoe, S. AU - Antin, P. B. PY - 1999 DA - 1999// TI - Expression of the homebox gene Hex during early stages of chick embryo development JO - Mech Dev VL - 80 UR - https://doi.org/10.1016/S0925-4773(98)00204-4 DO - 10.1016/S0925-4773(98)00204-4 ID - Yatskievych1999 ER - TY - JOUR AU - Parlato, R. AU - Rosica, A. AU - Rodriguez-Mallon, A. AU - Affuso, A. AU - Postiglione, M. P. AU - Arra, C. AU - Mansouri, A. AU - Kimura, S. AU - Di Lauro, R. AU - De Felice, M. PY - 2004 DA - 2004// TI - An integrated regulatory network controlling survival and migration in thyroid organogenesis JO - Dev Biol VL - 276 UR - https://doi.org/10.1016/j.ydbio.2004.08.048 DO - 10.1016/j.ydbio.2004.08.048 ID - Parlato2004 ER - TY - JOUR AU - Yaklichkin, S. AU - Vekker, A. AU - Stayrook, S. AU - Lewis, M. AU - Kessler, D. S. PY - 2007 DA - 2007// TI - Prevalence of the EH1 Groucho interaction motif in the metazoan Fox family of transcriptional regulators JO - BMC Genomics VL - 8 UR - https://doi.org/10.1186/1471-2164-8-201 DO - 10.1186/1471-2164-8-201 ID - Yaklichkin2007 ER - TY - JOUR AU - Yaklichkin, S. AU - Steiner, A. B. AU - Lu, Q. AU - Kessler, D. S. PY - 2007 DA - 2007// TI - FoxD3 and Grg4 physically interact to repress transcription and induce mesoderm in Xenopus JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M607412200 DO - 10.1074/jbc.M607412200 ID - Yaklichkin2007 ER - TY - JOUR AU - Roth, M. AU - Bonev, B. AU - Lindsay, J. AU - Lea, R. AU - Panagiotaki, N. AU - Houart, C. AU - Papalopulu, N. N. PY - 2010 DA - 2010// TI - FoxG1 and TLE2 act cooperatively to regulate ventral telencephalon formation JO - Development VL - 137 UR - https://doi.org/10.1242/dev.044909 DO - 10.1242/dev.044909 ID - Roth2010 ER - TY - JOUR AU - Brendel, V. AU - Bucher, P. AU - Nourbakhsh, I. R. AU - Blaisdell, B. E. AU - Karlin, S. PY - 1992 DA - 1992// TI - Methods and algorithms for statistical analysis of protein sequences JO - Proc Natl Acad Sci USA VL - 89 UR - https://doi.org/10.1073/pnas.89.6.2002 DO - 10.1073/pnas.89.6.2002 ID - Brendel1992 ER - TY - JOUR AU - Hanna-Rose, W. AU - Hansen, U. PY - 1996 DA - 1996// TI - Active repression mechanisms of eukaryotic transcription repressors JO - Trends Genet VL - 12 UR - https://doi.org/10.1016/0168-9525(96)10022-6 DO - 10.1016/0168-9525(96)10022-6 ID - Hanna-Rose1996 ER - TY - JOUR AU - Yang, Z. PY - 1997 DA - 1997// TI - PAML: a program package for phylogenetic analysis by maximum likelihood JO - Comput Appl Biosci VL - 13 ID - Yang1997 ER - TY - JOUR AU - Yang, Z. PY - 1998 DA - 1998// TI - Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution JO - Mol Biol Evol VL - 15 UR - https://doi.org/10.1093/oxfordjournals.molbev.a025957 DO - 10.1093/oxfordjournals.molbev.a025957 ID - Yang1998 ER - TY - JOUR AU - Taya, Y. AU - O'Kane, S. AU - Ferguson, M. W. PY - 1999 DA - 1999// TI - Pathogenesis of cleft palate in TGF-beta3 knockout mice JO - Development VL - 126 ID - Taya1999 ER - TY - JOUR AU - Hishinuma, A. AU - Ohmika, N. AU - Namatame, T. AU - Ieiri, T. PY - 2004 DA - 2004// TI - TTF-2 stimulates expression of 17 genes, including one novel thyroid-specific gene which might be involved in thyroid development JO - Mol Cell Endocrinol VL - 221 UR - https://doi.org/10.1016/j.mce.2004.04.003 DO - 10.1016/j.mce.2004.04.003 ID - Hishinuma2004 ER - TY - JOUR AU - Gupton, S. L. AU - Anderson, K. L. AU - Kole, T. P. AU - Fischer, R. S. AU - Ponti, A. AU - Hitchcock-DeGregori, S. E. AU - Danuser, G. AU - Fowler, V. M. AU - Wirtz, D. AU - Hanein, D. AU - Waterman-Storer, C. M. PY - 2005 DA - 2005// TI - Cell migration without a lamellipodium: translation of actin dynamics into cell movement mediated by tropomyosin JO - J Cell Biol VL - 168 UR - https://doi.org/10.1083/jcb.200406063 DO - 10.1083/jcb.200406063 ID - Gupton2005 ER - TY - JOUR AU - Bach, C. T. AU - Creed, S. AU - Zhong, J. AU - Mahmassani, M. AU - Schevzov, G. AU - Stehn, J. AU - Cowell, L. N. AU - Naumanen, P. AU - Lappalainen, P. AU - Gunning, P. W. AU - O'Neill, G. M. PY - 2009 DA - 2009// TI - Tropomyosin isoform expression regulates the transition of adhesions to determine cell speed and direction JO - Mol Cell Biol VL - 29 UR - https://doi.org/10.1128/MCB.00857-08 DO - 10.1128/MCB.00857-08 ID - Bach2009 ER - TY - JOUR AU - Leavesley, D. I. AU - Schwartz, M. A. AU - Rosenfeld, M. AU - Cheresh, D. A. PY - 1993 DA - 1993// TI - Integrin beta 1- and beta 3-mediated endothelial cell migration is triggered through distinct signaling mechanisms JO - J Cell Biol VL - 121 UR - https://doi.org/10.1083/jcb.121.1.163 DO - 10.1083/jcb.121.1.163 ID - Leavesley1993 ER - TY - JOUR AU - Venza, I. AU - Visalli, M. AU - Parrillo, L. AU - De Felice, M. AU - Teti, D. AU - Venza, M. PY - 2011 DA - 2011// TI - MSX1 and TGF-beta3 are novel target genes functionally regulated by FOXE1 JO - Mol Genet VL - 20 ID - Venza2011 ER - TY - JOUR AU - Gato, A. AU - Martinez, M. L. AU - Tudela, C. AU - Alonso, I. AU - Moro, J. A. AU - Formoso, M. A. AU - Ferguson, M. W. AU - Martínez-Alvarez, C. PY - 2002 DA - 2002// TI - TGF-beta(3)-induced chondroitin sulphate proteoglycan mediates palatal shelf adhesion JO - Dev Biol VL - 250 UR - https://doi.org/10.1006/dbio.2002.0792 DO - 10.1006/dbio.2002.0792 ID - Gato2002 ER - TY - JOUR AU - Mansouri, A. AU - Chowdhury, K. AU - Gruss, P. PY - 1998 DA - 1998// TI - Follicular cells of the thyroid gland require Pax8 gene function JO - Nat Genet VL - 19 UR - https://doi.org/10.1038/ng0598-87 DO - 10.1038/ng0598-87 ID - Mansouri1998 ER - TY - JOUR AU - Hughes, A. L. AU - Friedman, R. PY - 2008 DA - 2008// TI - Genome size reduction in the chicken has involved massive loss of ancestral protein-coding genes JO - Mol Biol Evol VL - 25 UR - https://doi.org/10.1093/molbev/msn207 DO - 10.1093/molbev/msn207 ID - Hughes2008 ER - TY - JOUR AU - Andrioli, L. P. AU - Oberstein, A. L. AU - Corado, M. S. AU - Yu, D. AU - Small, S. PY - 2004 DA - 2004// TI - Groucho-dependent repression by sloppy-paired 1 differentially positions anterior pair-rule stripes in the Drosophila embryo JO - Dev Biol VL - 276 UR - https://doi.org/10.1016/j.ydbio.2004.09.025 DO - 10.1016/j.ydbio.2004.09.025 ID - Andrioli2004 ER - TY - JOUR AU - Dermitzakis, E. T. AU - Clark, A. G. PY - 2001 DA - 2001// TI - Differential selection after duplication in mammalian developmental genes JO - Mol Biol Evol VL - 18 UR - https://doi.org/10.1093/oxfordjournals.molbev.a003835 DO - 10.1093/oxfordjournals.molbev.a003835 ID - Dermitzakis2001 ER - TY - JOUR AU - Neduva, V. AU - Russell, R. B. PY - 2005 DA - 2005// TI - Linear motifs: evolutionary interaction switches JO - FEBS Lett VL - 579 UR - https://doi.org/10.1016/j.febslet.2005.04.005 DO - 10.1016/j.febslet.2005.04.005 ID - Neduva2005 ER - TY - JOUR AU - Yamamoto, M. AU - Kuroiwa, A. PY - 2003 DA - 2003// TI - Hoxa-11 and Hoxa-13 are involved in repression of MyoD during limb muscle development JO - Dev Growth Differ VL - 45 UR - https://doi.org/10.1111/j.1440-169X.2003.00715.x DO - 10.1111/j.1440-169X.2003.00715.x ID - Yamamoto2003 ER - TY - JOUR AU - Williams, T. M. AU - Williams, M. E. AU - Heaton, J. H. AU - Gelehrter, T. D. AU - Innis, J. W. PY - 2005 DA - 2005// TI - Group 13 HOX proteins interact with the MH2 domain of R-Smads and modulate Smad transcriptional activation functions independent of HOX DNA-binding capability JO - Nucleic Acids Res VL - 33 UR - https://doi.org/10.1093/nar/gki761 DO - 10.1093/nar/gki761 ID - Williams2005 ER - TY - JOUR AU - Wong, E. Y. AU - Wang, X. A. AU - Mak, S. S. AU - Sae-Pang, J. J. AU - Ling, K. W. AU - Fritzsch, B. AU - Sham, M. H. PY - 2011 DA - 2011// TI - Hoxb3 negatively regulates Hoxb1 expression in mouse hindbrain patterning JO - Dev Biol VL - 352 UR - https://doi.org/10.1016/j.ydbio.2011.02.003 DO - 10.1016/j.ydbio.2011.02.003 ID - Wong2011 ER - TY - JOUR AU - Manley, N. R. AU - Capecchi, M. R. PY - 1998 DA - 1998// TI - Hox group 3 paralogs regulate the development and migration of the thymus, thyroid, and parathyroid glands JO - Dev Biol VL - 195 UR - https://doi.org/10.1006/dbio.1997.8827 DO - 10.1006/dbio.1997.8827 ID - Manley1998 ER - TY - JOUR AU - Carroll, S. B. PY - 2008 DA - 2008// TI - Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution JO - Cell VL - 134 UR - https://doi.org/10.1016/j.cell.2008.06.030 DO - 10.1016/j.cell.2008.06.030 ID - Carroll2008 ER - TY - JOUR AU - Wagner, G. P. AU - Lynch, V. J. PY - 2008 DA - 2008// TI - The gene regulatory logic of transcription factor evolution JO - Trends Ecol Evol VL - 23 UR - https://doi.org/10.1016/j.tree.2008.03.006 DO - 10.1016/j.tree.2008.03.006 ID - Wagner2008 ER - TY - JOUR AU - Notredame, C. AU - Higgins, D. G. AU - Heringa, J. PY - 2000 DA - 2000// TI - T-Coffee: A novel method for fast and accurate multiple sequence alignment JO - J Mol Biol VL - 302 UR - https://doi.org/10.1006/jmbi.2000.4042 DO - 10.1006/jmbi.2000.4042 ID - Notredame2000 ER - TY - JOUR AU - Felsenstein, J. PY - 1989 DA - 1989// TI - Mathematics vs. Evolution: Mathematical Evolutionary Theory JO - Science VL - 246 UR - https://doi.org/10.1126/science.246.4932.941 DO - 10.1126/science.246.4932.941 ID - Felsenstein1989 ER - TY - JOUR AU - Darnell, D. K. AU - Kaur, S. AU - Stanislaw, S. AU - Davey, S. AU - Konieczka, J. H. AU - Yatskievych, T. A. AU - Antin, P. B. PY - 2007 DA - 2007// TI - An In situ hybridization gene expression resource for the chicken embryo JO - Cytogenet Genome Res VL - 117 UR - https://doi.org/10.1159/000103162 DO - 10.1159/000103162 ID - Darnell2007 ER - TY - JOUR AU - Crooks, G. E. AU - Hon, G. AU - Chandonia, J. M. AU - Brenner, S. E. PY - 2004 DA - 2004// TI - WebLogo: a sequence logo generator JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.849004 DO - 10.1101/gr.849004 ID - Crooks2004 ER -