Figure 3

Average nucleotide variation. We calculated the Average nucleotide variation (middle lines of each graphic) from the median SNP percentages (dots indicates by dashes lines) for each aligned comparison (Y axis) of test strain versus the reference strains, CFN42 (blue) or CIAT652 (red). Average Confidence interval was adjusted (arrows with dashes lines) to the medians of the length distributions of the aligned fragments (genes). The medians SNPs that exceed the average confidence interval were outliers. Abscissa: BRASIL5, CIAT894, GR56, IE4771, KIM5 and 8C-3.