Table 1 Species and DNA sequences examined in this study.
No. | Species | Voucher | 28S rDNA | histone H3 | ITS rDNA | mt COI | mt IGR |
|---|---|---|---|---|---|---|---|
1 | Acanthastrea echinata (XX; Mussidae) | S031 | HQ203399 | HQ203520 | HQ203308 | EU371658 | Â |
2 | Barabattoia amicorum | S047 | HQ203400 | HQ203521 | HQ203309 | FJ345412 | FJ345480 |
3 | Caulastraea echinulata | S041 | HQ203401 | HQ203522 | Â | FJ345414 | FJ345496 |
4 | Caulastraea furcata | P108 | HQ203402 | HQ203523 | Â | HQ203248 | HQ203639 |
5 | Caulastraea tumida | G61875 | HQ203403 | HQ203524 | HQ203310 | HQ203249 | HQ203640 |
6 | Cyphastrea chalcidicum | G61902 | HQ203404 | HQ203525 | HQ203311 | HQ203250 | Â |
7 | Cyphastrea chalcidicum | S103 | HQ203405 | HQ203526 | HQ203312 | FJ345415 | Â |
8 | Cyphastrea microphthalma | S069 | HQ203406 | HQ203527 | Â | FJ345416 | Â |
9 | Cyphastrea serailia | G61889 | HQ203407 | HQ203528 | HQ203313 | HQ203251 | Â |
10 | Cyphastrea serailia | S024 | HQ203408 | HQ203529 | HQ203314 | EU371659 | Â |
11 | Cyphastrea serailia | P120 | HQ203409 | HQ203530 | Â | HQ203252 | Â |
12 | Diploastrea heliopora (XV) | S048 | HQ203410 | HQ203531 | HQ203315 | EU371660 | Â |
13 | Echinopora gemmacea | S120 | HQ203411 | HQ203532 | HQ203316 | FJ345418 | FJ345457 |
14 | Echinopora horrida | G61907 | HQ203412 | HQ203533 | HQ203317 | HQ203253 | HQ203641 |
15 | Echinopora lamellosa | S109 | HQ203413 | HQ203534 | HQ203318 | FJ345419 | FJ345458 |
16 | Echinopora mammiformis | G61884 | HQ203414 | HQ203535 | HQ203319 | HQ203254 | HQ203642 |
17 | Echinopora pacificus | S110 | HQ203415 | HQ203536 | HQ203320 | FJ345420 | FJ345459 |
18 | Favia danae | G61885 | HQ203416 | HQ203537 | HQ203321 | Â | HQ203643 |
19 | Favia danae | S092 | HQ203417 | HQ203538 | Â | EU371663 | FJ345476 |
20 | Favia favus | G61880 | HQ203418 | HQ203539 | HQ203322 | HQ203255 | HQ203644 |
21 | Favia favus | G61915 | HQ203419 | HQ203540 | HQ203323 | HQ203256 | HQ203645 |
22 | Favia favus | S003 | HQ203420 | HQ203541 | HQ203324 | EU371710 | FJ345511 |
23 | Favia favus | S025 | HQ203421 | HQ203542 | Â | EU371664 | FJ345465 |
24 | Favia favus | S040 | HQ203422 | HQ203543 | HQ203325 | EU371665 | FJ345466 |
25 | Favia favus | P105 | HQ203423 | HQ203544 | Â | HQ203257 | HQ203646 |
26 | Favia fragum (XXI) | Â | AF549222 | Â | Â | AB117222 | Â |
27 | Favia cf. laxa | S013 | HQ203424 | HQ203545 | Â | EU371707 | FJ345508 |
28 | Favia cf. laxa | S014 | HQ203425 | HQ203546 | HQ203326 | EU371708 | FJ345509 |
29 | Favia lizardensis | G61872 | HQ203426 | HQ203547 | HQ203327 | Â | HQ203647 |
30 | Favia lizardensis | S072 | HQ203427 | HQ203548 | HQ203328 | EU371668 | FJ345484 |
31 | Favia lizardensis | P136 | HQ203428 | HQ203549 | Â | Â | HQ203648 |
32 | Favia cf. maritima | G61912 | HQ203429 | HQ203550 | HQ203329 | HQ203258 | HQ203649 |
33 | Favia matthaii | G61881 | HQ203430 | HQ203551 | HQ203330 | Â | Â |
34 | Favia matthaii | G61883 | HQ203431 | HQ203552 | HQ203331 | HQ203259 | HQ203650 |
35 | Favia matthaii | S005 | HQ203432 | HQ203553 | HQ203332 | EU371669 | FJ345471 |
36 | Favia matthaii | S029 | HQ203433 | HQ203554 | HQ203333 | EU371671 | FJ345473 |
37 | Favia maxima | S052 | HQ203434 | HQ203555 | HQ203334 | EU371674 | Â |
38 | Favia maxima | P142 | HQ203435 | HQ203556 | Â | HQ203260 | HQ203651 |
39 | Favia cf. maxima | P134 | HQ203436 | HQ203557 | HQ203335 | HQ203261 | HQ203652 |
40 | Favia pallida | G61898 | HQ203437 | HQ203558 | HQ203336 | Â | HQ203653 |
41 | Favia pallida | S036 | HQ203438 | HQ203559 | HQ203337 | EU371675 | FJ345482 |
42 | Favia rosaria | G61911 | HQ203439 | HQ203560 | HQ203338 | HQ203262 | HQ203654 |
43 | Favia rotumana | S068 | HQ203440 | HQ203561 | HQ203339 | FJ345427 | FJ345485 |
44 | Favia rotundata | G61874 | HQ203441 | HQ203562 | HQ203340 | HQ203263 | Â |
45 | Favia rotundata | P132 | HQ203442 | HQ203563 | Â | Â | Â |
46 | Favia speciosa | S001 | HQ203443 | HQ203564 | HQ203341 | EU371677 | FJ345505 |
47 | Favia speciosa | S026 | HQ203444 | HQ203565 | Â | EU371680 | FJ345506 |
48 | Favia speciosa | P103 | HQ203445 | HQ203566 | HQ203342 | HQ203264 | HQ203655 |
49 | Favia stelligera | P141 | HQ203446 | HQ203567 | HQ203343 | HQ203265 | HQ203656 |
50 | Favia truncatus | G61897 | HQ203447 | HQ203568 | HQ203344 | HQ203266 | HQ203657 |
51 | Favites abdita | S002 | HQ203448 | HQ203569 | HQ203345 | HQ203267 | Â |
52 | Favites chinensis | S084 | HQ203449 | HQ203570 | HQ203346 | HQ203268 | Â |
53 | Favites complanata | S007 | HQ203450 | HQ203571 | HQ203347 | EU371689 | Â |
54 | Favites flexuosa | P116 | HQ203451 | HQ203572 | HQ203348 | HQ203269 | Â |
55 | Favites halicora | S115 | HQ203452 | HQ203573 | HQ203349 | HQ203270 | Â |
56 | Favites paraflexuosa | S100 | HQ203453 | HQ203574 | HQ203350 | EU371694 | FJ345521 |
57 | Favites pentagona | S086 | HQ203454 | HQ203575 | HQ203351 | EU371695 | Â |
58 | Favites pentagona | P111 | HQ203455 | HQ203576 | Â | HQ203271 | Â |
59 | Favites russelli | G61895 | HQ203456 | HQ203577 | HQ203352 | HQ203272 | HQ203658 |
60 | Favites stylifera | P128 | HQ203457 | HQ203578 | HQ203353 | HQ203273 | HQ203659 |
61 | Goniastrea aspera | S107 | HQ203458 | HQ203579 | HQ203354 | FJ345430 | FJ345487 |
62 | Goniastrea australensis | G61876 | HQ203459 | HQ203580 | HQ203355 | HQ203274 | HQ203660 |
63 | Goniastrea australensis | S088 | HQ203460 | HQ203581 | HQ203356 | FJ345431 | FJ345490 |
64 | Goniastrea australensis | S098 | HQ203461 | HQ203582 | Â | EU371696 | FJ345491 |
65 | Goniastrea edwardsi | S045 | HQ203462 | HQ203583 | HQ203357 | EU371697 | FJ345492 |
66 | Goniastrea edwardsi | S117 | HQ203463 | HQ203584 | Â | FJ345432 | FJ345493 |
67 | Goniastrea favulus | G61877 | HQ203464 | HQ203585 | HQ203358 | Â | HQ203661 |
68 | Goniastrea favulus | S022 | HQ203465 | HQ203586 | Â | EU371698 | FJ345494 |
69 | Goniastrea palauensis | S021 | HQ203466 | HQ203587 | HQ203359 | EU371699 | FJ345488 |
70 | Goniastrea pectinata | G61879 | HQ203467 | HQ203588 | HQ203360 | Â | HQ203662 |
71 | Goniastrea pectinata | S043 | HQ203468 | HQ203589 | Â | FJ345434 | FJ345489 |
72 | Goniastrea pectinata | P110 | HQ203469 | HQ203590 | Â | Â | HQ203663 |
73 | Goniastrea retiformis | S083 | HQ203470 | HQ203591 | HQ203361 | EU371700 | FJ345527 |
74 | Goniastrea retiformis | P119 | HQ203471 | HQ203592 | Â | HQ203275 | HQ203664 |
75 | Hydnophora exesa (Merulinidae) | P127 | HQ203472 | HQ203593 | HQ203362 | HQ203276 | HQ203665 |
76 | Hydnophora microconos(Merulinidae) | P121 | HQ203473 | HQ203594 | HQ203363 | HQ203277 | HQ203666 |
77 | Hydnophora pilosa (Merulinidae) | P138 | HQ203474 | HQ203595 | HQ203364 | HQ203278 | HQ203667 |
78 | Leptoria irregularis | P133 | HQ203475 | HQ203596 | Â | HQ203279 | HQ203668 |
79 | Leptoria phrygia | S081 | HQ203476 | HQ203597 | HQ203365 | EU371705 | FJ345529 |
80 | Lobophyllia corymbosa (XIX; Mussidae) | Â | AF549237 | Â | Â | AB117241 | Â |
81 | Merulina ampliata (Merulinidae) | P106 | HQ203477 | HQ203598 | Â | HQ203280 | HQ203669 |
82 | Merulina scabricula (Merulinidae) | P114 | HQ203478 | HQ203599 | HQ203366 | HQ203281 | HQ203670 |
83 | Montastraea annularis | A622 | HQ203479 | HQ203600 | HQ203367 | HQ203282 | Â |
84 | Montastraea cf. annuligera | P117 | HQ203481 | HQ203602 | HQ203369 | Â | HQ203671 |
85 | Montastraea cavernosa (XVI) | A005 | HQ203480 | HQ203601 | HQ203368 | HQ203283 | Â |
86 | Montastraea colemani | P118 | HQ203482 | HQ203603 | Â | HQ203284 | Â |
87 | Montastraea curta | G61882 | HQ203483 | HQ203604 | HQ203370 | HQ203285 | Â |
88 | Montastraea curta | P122 | HQ203484 | HQ203605 | Â | HQ203286 | Â |
89 | Montastraea magnistellata | G61896 | HQ203485 | HQ203606 | HQ203371 | HQ203287 | Â |
90 | Montastraea magnistellata | P109 | HQ203486 | HQ203607 | Â | HQ203288 | Â |
91 | Montastraea multipunctata | P131 | HQ203487 | HQ203608 | HQ203372 | HQ203289 | Â |
92 | Montastraea salebrosa | P139 | HQ203488 | HQ203609 | HQ203373 | HQ203290 | HQ203672 |
93 | Montastraea valenciennesi | G61904 | HQ203489 | HQ203610 | Â | HQ203291 | HQ203673 |
94 | Montastraea valenciennesi | S006 | HQ203490 | HQ203611 | HQ203374 | EU371713 | FJ345514 |
95 | Montastraea valenciennesi | S008 | HQ203491 | HQ203612 | Â | EU371714 | FJ345515 |
96 | Montastraea valenciennesi | P102 | HQ203492 | HQ203613 | HQ203375 | HQ203292 | Â |
97 | Moseleya latistellata | G61909 | HQ203493 | HQ203614 | HQ203376 | HQ203293 | HQ203674 |
98 | Mussa angulosa (XXI; Mussidae) | Â | AF549236 | Â | AB441402 | NC_008163 | Â |
99 | Mycedium elephantotus (Pectiniidae) | S121 | HQ203494 | HQ203615 | HQ203377 | HQ203294 | HQ203675 |
100 | Mycedium robokaki(Pectiniidae) | S126 | HQ203495 | HQ203616 | HQ203378 | HQ203295 | HQ203676 |
101 | Oulophyllia bennettae | G61873 | HQ203496 | HQ203617 | Â | HQ203296 | HQ203677 |
102 | Oulophyllia bennettae | S033 | HQ203497 | HQ203618 | HQ203379 | FJ345436 | FJ345497 |
103 | Oulophyllia aff. bennettae | P140 | HQ203498 | HQ203619 | HQ203380 | HQ203297 | Â |
104 | Oulophyllia crispa | S055 | HQ203499 | HQ203620 | HQ203381 | EU371721 | FJ345500 |
105 | Pectinia alcicornis (Pectiniidae) | P124 | HQ203500 | HQ203621 | HQ203382 | HQ203298 | HQ203678 |
106 | Pectinia ayleni (Pectiniidae) | S122 | HQ203501 | HQ203622 | HQ203383 | HQ203299 | HQ203679 |
107 | Pectinia lactuca(Pectiniidae) | P115 | HQ203502 | HQ203623 | HQ203384 | HQ203300 | HQ203680 |
108 | Pectinia paeonia (Pectiniidae) | P126 | HQ203503 | HQ203624 | HQ203385 | HQ203301 | HQ203681 |
109 | Platygyra acuta | P123 | HQ203504 | HQ203625 | HQ203386 | Â | HQ203682 |
110 | Platygyra contorta | P112 | HQ203505 | HQ203626 | HQ203387 | Â | HQ203683 |
111 | Platygyra daedalea | G61878 | HQ203506 | HQ203627 | Â | Â | HQ203684 |
112 | Platygyra daedalea | S116 | HQ203507 | HQ203628 | HQ203388 | FJ345440 | FJ345530 |
113 | Platygyra lamellina | G61887 | HQ203508 | HQ203629 | HQ203389 | HQ203302 | HQ203685 |
114 | Platygyra lamellina | S114 | HQ203509 | HQ203630 | Â | FJ345441 | FJ345531 |
115 | Platygyra pini | G61899 | HQ203510 | HQ203631 | HQ203390 | HQ203303 | HQ203686 |
116 | Platygyra pini | S035 | HQ203511 | HQ203632 | HQ203391 | FJ345443 | FJ345535 |
117 | Platygyra ryukyuensis | P101 | HQ203512 | HQ203633 | HQ203392 | HQ203304 | HQ203687 |
118 | Platygyra sinensis | S118 | HQ203513 | HQ203634 | HQ203393 | FJ345442 | FJ345534 |
119 | Platygyra sinensis | P130 | HQ203514 | HQ203635 | Â | HQ203305 | HQ203688 |
120 | Platygyra cf. verweyi | S037 | HQ203515 | HQ203636 | HQ203394 | EU371722 | FJ345532 |
121 | Plesiastrea versipora (XIV) | S127 | HQ203397 | HQ203518 | HQ203307 | HQ203246 | Â |
122 | Plesiastrea versipora (XIV) | P137 | HQ203398 | HQ203519 | Â | HQ203247 | Â |
123 | Scapophyllia cylindrica (Merulinidae) | S060 | HQ203516 | HQ203637 | HQ203395 | FJ345444 | FJ345502 |
124 | Trachyphyllia geoffroyi (Trachyphylliidae) | J001 | HQ203517 | HQ203638 | HQ203396 | HQ203306 | HQ203689 |