Diversity and selective sweep in the OsAMT1;1genomic region of rice

Table 2 Nucleotide diversity at OsAMT1;1 and at seven loci around it in O. sativa and O. rufipogon

Genes predicted	Position ^a	Length ^b	O. sativa(n = 94)^c				O. rufipogon(n = 19)
			Pi×10³	Hd	D1	D2	Pi×10³	Hd	D1	D2	The ratio of Pi ^d
Glutaredoxin subgroup I	-101.9	853	1.21	0.516	1.38	-0.57	2.15	0.830	-2.02*	-3.11**	0.563
C3HC4 type zinc finger family	-74.1	757	0.06	0.042	-1.39	-2.80*	1.87	0.766	-1.31	-1.44	0.032
Lipase class 3 family	-38.5	756	0.06	0.042	-1.39	-2.80*	1.81	0.754	-1.63	-2.17	0.033
Cupin superfamily	-7.3	863	0.05	0.021	-1.39	-2.80*	1.72	0.865	-1.20	-1.44	0.029
OsAMT1;1	0	2688	0.08	0.123	-2.00*	-3.13*	1.72	0.982	-1.59	-0.57	0.047
Hypothetical protein	12.4	877	0.02	0.021	-1.03	-2.02	1.65	0.807	-1.25	-0.88	0.012
Transcriptional corepressor LEUNIG	27.5	638	0.13	0.042	-1.79*	-3.84**	1.69	0.678	-1.21	-1.51	0.077
Expressed protein	49.5	832	2.01	0.576	0.52	-1.40	3.99	0.906	-0.50	-0.41	0.504

^a Position of sampled loci as far to the first nucleotide of OsAMT1;1 that was considered as 0 kb; ^b Length (bp) of sampled alignment regions is relative to Nipponbare genomic sequence; ^c Pi (π), nucleotide diversity per site; Hd, haplotype diversity; D1, Tajama's D; D2, Fu and Li's D*; *, ** significant at 0.05 and 0.02 level, respectively; ^d The relative ratio of Pi for O. sativa to O. rufipogon.

ISSN: 2730-7182