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Table 2 Bioinformatic results for proteins involved in the RanGTP-dependent RNA export pathways

From: Comparative genomics of proteins involved in RNA nucleocytoplasmic export

  

Opisthokonta

Amo

Plantae

Chromalveolata

Excavata

 

Queries

Hsa

Cin

Dme

Cel

Mbr

Cgl

Afu

Spo

Cne

Ecu

Ddi

Ehi

Ath

Osa

Pop

Ppa

Cre

Vca

Cme

Ehu

Tpa

Pfa

Tgo

Cpa

Pte

Tth

Ptr

Tps

Pin

Lma

Tbr

Ngr

Gla

Tva

 

Hsa_RAN

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

 

Sce_Gsp1p

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

1

 

Hsa_Ranbp1

1

2

4

4

2

2

2

2

2

2

2

2

1

1

1

2

4

2

4

2

4

4

2

2

2

2

2

2

1

3

2

2

2

2

 

Sce_Yrb1p

2

2

4

4

2

1

1

1

2

2

2

2

2

2

2

2

4

2

4

2

4

4

1

2

2

2

2

2

2

3

2

2

3

2

Ran cycle proteins

                                   
 

Hsa_RCC1

1

1

4

4

4

3

3

3

3

3

4

4

3

3

2

3

3

4

2

4

4

3

4

4

4

4

4

3

2

4

4

4

NC

4

 

Sce_Srm1p

3

3

3

3

3

1

1

2

2

3

3

NC

3

3

3

3

3

3

4

3

4

4

4

4

3

4

4

3

3

4

4

3

NC

4

 

Hsa_RANGAP

1

1

2

4

3

4

3

4

4

4

3

NC

3

3

3

3

4

4

3

4

NC

NC

NC

NC

4

4

3

4

4

3

4

3

4

3

 

Sce_Rna1

4

4

4

4

4

1

1

1

2

3

4

NC

4

4

4

4

NC

3

NC

4

NC

NC

NC

NC

3

3

NC

NC

4

NC

NC

NC

NC

NC

 

Hsa_XPO5

1

3

2

5

3

3

3

3

5

5

3

NC

3

3

5

3

5

5

5

5

5

5

5

5

NC

NC

5

5

3

5

5

3

NC

5

 

Sce_Msn5p

3

5

NC

NC

3

1

3

3

NC

NC

3

NC

NC

NC

NC

4

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

3

NC

NC

4

NC

NC

Exportins

Hsa_Xpot

1

1

4

3

3

2

3

2

3

NC

2

5

2

3

2

2

NC

NC

3

4

NC

4

NC

5

NC

NC

3

3

3

3

3

4

5

5

 

Sce_Los1p

3

3

NC

3

4

1

3

3

3

NC

3

5

3

4

3

3

NC

NC

NC

NC

NC

NC

NC

5

NC

NC

NC

NC

3

5

4

4

NC

NC

 

Hsa_XPO1

1

1

1

1

1

1

1

1

1

2

1

4

1

1

1

1

1

1

1

1

2

2

2

1

4

2

1

1

1

2

2

1

4

3

 

Sce_Crm1p

1

1

1

1

1

1

1

1

1

2

1

4

1

1

1

1

1

1

1

2

2

2

2

2

4

2

1

1

1

3

2

1

4

3

 

Hsa_EEFIA

1

1

1

1

1

1

1

1

1

2

1

1

1

1

1

1

1

1

1

4

1

1

1

1

1

1

1

1

1

1

1

1

1

1

 

Sce_Tef2p

1

1

1

1

1

1

1

1

1

2

1

1

1

1

1

1

1

1

1

4

1

1

1

1

1

1

1

1

1

1

1

1

1

1

 

Hsa_CBP20

1

1

1

1

4

4

2

1

2

2

4

2

4

4

4

2

1

4

1

4

4

4

4

4

1

4

2

2

4

1

2

4

NC

1

 

Sce_Cbc2p

3

3

3

2

5

1

2

2

3

3

3

3

2

2

2

4

3

4

4

2

2

3

4

3

3

3

4

4

4

2

1

4

NC

2

 

Hsa_CBP80

1

1

1

2

NC

3

3

3

3

NC

2

NC

2

2

2

2

4

4

4

3

NC

NC

4

NC

3

NC

NC

NC

3

NC

NC

3

NC

NC

 

Sce_Sto1p

4

5

3

3

NC

1

3

4

3

NC

4

NC

4

4

4

4

5

5

5

NC

NC

NC

NC

NC

NC

NC

NC

NC

4

NC

NC

NC

NC

NC

 

Hsa_PHAX

1

3

2

4

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

5

5

NC

5

5

NC

NC

NC

NC

5

NC

NC

NC

NC

NC

 

Sce-no ortholog

                                  

Additional export factors

                                   
 

Hsa_NMD3

1

1

1

1

1

1

1

1

1

2

1

2

1

1

1

1

4

1

1

1

2

4

4

1

1

1

1

1

1

1

1

1

2

2

 

Sce_Nmd3p

1

1

1

1

1

1

1

1

1

2

1

2

1

1

1

1

4

1

1

1

2

4

4

1

1

1

1

1

1

1

1

1

2

2

 

Hsa_ZNF622

1

1

2

3

2

3

2

2

2

NC

2

2

2

3

2

2

4

3

3

4

4

3

4

4

4

2

3

3

2

3

4

NC

3

4

 

Sce_Rei1p

3

2

2

2

2

1

3

2

2

NC

2

3

2

2

3

2

3

4

3

4

3

5

5

3

3

2

2

4

2

3

3

NC

2

3

 

Hsa-no ortholog

                                  
 

Sce_Arx1p

4

4

4

4

4

1

4

3

NC

NC

4

4

4

4

4

4

5

4

4

4

4

4

4

4

4

5

4

4

4

4

4

4

NC

NC

 

Hsa-no ortholog

                                  
 

Sce_Alb1p

NC

NC

NC

NC

NC

1

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

NC

  1. Results were ranked into 5 categories (1-5; with 1 being the most conserved). NC (Not Classified). We present results for a representative subset of species in here, and full results are presented in Table S2 (Additional File 1)