Table 3 Bioinformatic results for proteins involved the RanGTP-independent mRNA export pathway
From: Comparative genomics of proteins involved in RNA nucleocytoplasmic export
Opisthokonta | Amo | Plantae | Chromalveolata | Excavata | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Queries | Hsa | Cin | Dme | Cel | Mbr | Cgl | Afu | Spo | Cne | Ecu | Ddi | Ehi | Ath | Osa | Pop | Ppa | Cre | Vca | Cme | Ehu | Tpa | Pfa | Tgo | Cpa | Pte | Tth | Ptr | Tps | Pin | Lma | Tbr | Ngr | Gla | Tva | ||
Hsa_CETN3 | 1 | 1 | 4 | 1 | 1 | 1 | 4 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | ||
Sce_Cdc31p | 1 | 1 | 4 | 1 | 1 | 1 | 4 | 1 | 1 | 2 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | ||
Hsa_MCM3AP | 1 | 3 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 4 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | NC | NC | 5 | 5 | 5 | 5 | 5 | 5 | 5 | NC | NC | 5 | NC | 5 | ||
Sce_Sac3p | 4 | 5 | 5 | 5 | 5 | 1 | 5 | 4 | 5 | 5 | 5 | NC | 5 | 5 | 5 | 5 | 5 | 5 | 5 | 5 | NC | NC | NC | NC | NC | NC | 5 | 5 | 5 | NC | NC | 4 | NC | 5 | ||
TREX-2 | ||||||||||||||||||||||||||||||||||||
Hsa-no ortholog | ||||||||||||||||||||||||||||||||||||
Sce_Thp1p | 4 | 4 | 3 | 3 | 3 | 1 | NC | 3 | NC | NC | 3 | NC | 3 | 4 | NC | 4 | NC | NC | 3 | NC | NC | NC | NC | NC | 3 | NC | 4 | 4 | 4 | NC | NC | 4 | NC | NC | ||
Hsa-no ortholog | ||||||||||||||||||||||||||||||||||||
Sce_Sus1p | 2 | 1 | 2 | NC | 2 | NC | NC | 2 | 2 | NC | 2 | NC | NC | NC | 2 | 2 | 3 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | ||
Hsa_THOC2 | 1 | 1 | 1 | 2 | 4 | 3 | 4 | 2 | 4 | NC | 4 | 5 | 2 | 2 | 2 | 2 | NC | 4 | 5 | 4 | 4 | 5 | 4 | NC | 3 | 3 | 3 | 3 | 2 | NC | NC | 3 | NC | NC | ||
Sce_Rlr1p | 3 | 3 | 3 | 3 | 4 | 1 | 4 | 3 | 3 | NC | 4 | 5 | 3 | 3 | 4 | 3 | NC | 4 | NC | NC | NC | 5 | NC | NC | 4 | 4 | 4 | 4 | 4 | NC | NC | 4 | NC | 4 | ||
Hsa-no ortholog | ||||||||||||||||||||||||||||||||||||
Sce_Tho1p | NC | NC | NC | NC | NC | 2 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | 5 | NC | NC | NC | NC | NC | NC | ||
Hsa-no ortholog | ||||||||||||||||||||||||||||||||||||
Sce_Hpr1p | NC | NC | NC | NC | NC | 2 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | ||
Hsa-no ortholog | ||||||||||||||||||||||||||||||||||||
Sce_Mft1p | NC | NC | NC | NC | NC | 2 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | ||
THO | ||||||||||||||||||||||||||||||||||||
Hsa-no ortholog | ||||||||||||||||||||||||||||||||||||
Sce_Thp2p | NC | NC | NC | NC | NC | 1 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | ||
Hsa_UAP56 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | ||
Sce_Sub2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | ||
TREX | Hsa-no ortholog | |||||||||||||||||||||||||||||||||||
Sce_Yra1p | NC | NC | 3 | 2 | NC | 1 | 3 | 3 | 2 | NC | NC | 4 | NC | 4 | 2 | 2 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | 3 | NC | NC | NC | NC | 4 | ||
Hsa_THOC3 | 1 | 1 | 1 | 2 | 2 | 3 | 2 | 2 | 4 | 3 | 4 | 3 | 1 | 1 | 1 | 1 | 2 | 2 | 4 | 1 | 3 | 4 | 4 | 4 | 2 | 2 | 2 | 4 | 2 | 3 | 4 | 4 | 3 | 3 | ||
Sce_Tex1p | 3 | 5 | 3 | 3 | 3 | 1 | NC | 4 | 4 | NC | 3 | 5 | 3 | 3 | 3 | 3 | 4 | NC | 4 | NC | 3 | NC | NC | NC | 3 | 3 | NC | NC | 3 | NC | NC | NC | NC | 5 | ||
Hsa_TAP | 1 | 2 | 2 | 2 | 3 | 3 | 2 | 2 | 3 | NC | 4 | 4 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | 3 | NC | NC | ||
Sce_Mex67p | 3 | 3 | 3 | NC | NC | 1 | 2 | 3 | 3 | NC | 4 | 4 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | 5 | 5 | NC | NC | NC | NC | NC | 5 | 5 | 4 | NC | NC | ||
mRNA transport adaptor | ||||||||||||||||||||||||||||||||||||
Hsa_p15 | 1 | 2 | 1 | 2 | NC | 3 | 1 | 4 | 2 | NC | 3 | 3 | 2 | 3 | 2 | 3 | NC | NC | 3 | NC | 3 | NC | NC | 3 | NC | NC | NC | NC | 3 | 2 | 2 | 3 | NC | 3 | ||
Sce_Mtr2p | NC | NC | NC | NC | NC | 1 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | ||
Hsa_DDX19 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 2 | ||
Sce_Dbp5p | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 4 | 1 | 1 | 1 | 2 | 2 | 2 | 1 | 2 | 2 | 1 | 2 | 1 | ||
Hsa-no ortholog | ||||||||||||||||||||||||||||||||||||
Sce_Gle1p | 4 | 3 | 3 | NC | NC | 1 | NC | 2 | 3 | NC | NC | NC | NC | 3 | NC | NC | 5 | NC | 4 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | 4 | NC | NC | ||
Hsa_RAE1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 1 | 1 | 2 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 4 | 2 | 2 | 4 | 2 | 1 | 1 | 1 | 3 | 3 | 2 | 3 | 3 | ||
Sce_Gle2p | 2 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 3 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | NC | 2 | 1 | 4 | 2 | 1 | 1 | 1 | 3 | 2 | 2 | 3 | 2 | ||
Additional export factors | ||||||||||||||||||||||||||||||||||||
Hsa_TPR | 1 | 5 | 3 | 4 | NC | 4 | 3 | 5 | 5 | NC | 4 | NC | 3 | 5 | 3 | 5 | NC | 4 | NC | NC | NC | NC | NC | NC | NC | NC | 3 | 3 | 3 | NC | NC | 5 | NC | NC | ||
Sce_Mlp1p | 2 | 4 | 3 | NC | NC | 1 | 2 | 3 | NC | NC | NC | NC | 4 | NC | 4 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | 5 | 4 | 5 | NC | NC | 5 | NC | NC | ||
Hsa-no ortholog | ||||||||||||||||||||||||||||||||||||
Sce_Nab2p | 4 | NC | NC | NC | NC | 1 | 3 | 4 | 3 | NC | NC | NC | NC | NC | NC | NC | NC | NC | 3 | NC | NC | NC | 4 | 5 | NC | NC | NC | NC | NC | NC | NC | NC | NC | NC | ||
Hsa_HNRNPM | 1 | 3 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | NC | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | NC | 4 | 4 | 4 | 4 | 4 | 4 | 4 | NC | 4 | ||
Sce_Gbp2p | 4 | 2 | 4 | 4 | 3 | 2 | 3 | 3 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 3 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 4 | 3 | 4 | 2 | 4 | 4 | 4 | ||