Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

Table 1 Average per site OV values of plastome regions for full plastome alignment

	Noncoding regions	Protein-coding exons	Introns	tRNA	rRNA
average OV	0.04546^a (0.12833)	0.03153^b (0.11227)	0.02110^c (0.08880)	0.00443^e (0.03725)	0.00462^e (0.04255)
average OV without ycf1		0.01907^c (0.08184)
without ycf1 or ycf2		0.01478^d (0.06997)

Values given are for alignment of all 113 Pinus and Pinaceae accessions. Standard deviations are given in parentheses. Mean values with different superscript letters are significantly different at α < 0.05 in Tukey’s HSD test, following one-way ANOVA supporting different means at p < 0.0001.

ISSN: 2730-7182