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Table 1 The divergence of histone modification code associated with promoter or ORF region of duplicate genes involving in 37 biological processes

From: Histone modification pattern evolution after yeast gene duplication

Biological Process          D HM-P          D HM-O
 Mean  S.E.a  Mean  S.E.
Cofactor metabolic process 1.089857 0.099487 0.94615 0.079585
Cellular amino acid and derivative metabolic process 1.056124 0.075125 0.735075 0.058636
Cell cycle 1.022464 0.070499 0.628888 0.045862
Cytoskeleton organization 1.011731 0.100702 0.732692 0.068568
Carbohydrate metabolic process 0.957513 0.041359 0.801785 0.03478
Cell wall organization 0.943616 0.078784 0.919398 0.069325
Membrane organization 0.943309 0.067702 0.786555 0.069908
Lipid metabolic process 0.93571 0.079815 0.731593 0.059279
Generation of precursor metabolites and energy 0.928247 0.096518 0.882262 0.072135
Anatomical structure morphogenesis 0.921051 0.079036 0.777731 0.073299
Protein modification process 0.900252 0.038873 0.854947 0.030103
Protein folding 0.895056 0.060764 0.677196 0.05632
Response to stress 0.891941 0.051014 0.766131 0.04367
Protein catabolic process 0.877025 0.072138 0.74283 0.065929
Vesicle-mediated transport 0.867052 0.045818 0.763747 0.04406
Cytokinesis 0.855475 0.128721 0.458555 0.075571
Vitamin metabolic process 0.844587 0.123271 0.697339 0.095067
Transport 0.819455 0.026288 0.726211 0.021028
Heterocycle metabolic process 0.812252 0.080271 0.737343 0.070763
Meiosis 0.803064 0.204095 0.586892 0.16534
Cell budding 0.798157 0.088983 0.814543 0.12039
Signal transduction 0.796985 0.069456 0.846847 0.05721
RNA metabolic process 0.792216 0.043033 0.562501 0.032646
Cellular aromatic compound metabolic process 0.783433 0.116406 0.685336 0.092675
Ribosome biogenesis 0.745581 0.078664 0.489313 0.057953
Cellular respiration 0.741278 0.175087 0.970903 0.130576
Conjugation 0.741105 0.115964 0.561448 0.065045
Cellular homeostasis 0.732899 0.107582 0.622864 0.080052
Sporulation resulting in formation of a cellular spore 0.726966 0.119265 0.430464 0.083954
Organelle organization 0.709827 0.043332 0.569849 0.029456
Response to chemical stimulus 0.675718 0.055068 0.590837 0.045851
Nucleus organization 0.668734 0.212327 0.396937 0.134765
Transcription 0.586723 0.061277 0.490756 0.047904
Pseudohyphal growth 0.523636 0.183077 0.741094 0.154572
DNA metabolic process 0.520462 0.057569 0.403555 0.03735
Translation 0.475206 0.058331 0.32502 0.050416
Other 0.803085 0.04149 0.791027 0.036751
ANOVA test F = 3.91, P < 10-13   F = 7.60, P < 10-15  
ANCOVA test F = 2.24, P < 10-4   F = 4.78, P < 10-15  
  1. a: S.E. denotes the standard error.