Skip to main content

Table 4 Classification of unknown bHLH sequences

From: Accurate discrimination of bHLH domains in plants, animals, and fungi using biologically meaningful sites

SeqId

BLAST

Mahal. Dist

Kingdom (Prob)

Species Name (Common)

Cov.

iid

Animal

Fungi

Plant

ECU95545.1

Ostreococcus lucimarinus (green algae)

93%

90%

7.60

13.6

11.0

Animal

ECR14344.1

Sus scrofa (pig)

87%

32%

4.90

9.18

8.22

Animal

ECB02340.1

Micromonas sp. RCC299 (green algae)

85%

68%

7.58

8.58

4.93

Plant

ECZ39823.1

Ostreococcus tauri (green algae)

79%

53%

9.14

6.53

3.51

Plant

EBY00838.1

Monosiga brevicolli (choanoflagellates)

49%

66%

3.34

8.02

14.3

Animal

EBG07815.1

Methanocaldo-coccus vulcanius

38%

29%

1.62

9.99

13.2

Animal

EBZ65459.1

Branchiostoma belcheri (Japanese lancelet)

36%

38%

2.31

10.2

12.1

Animal

ECI19714.1

Daphnia pulex (common water flea)

34%

44%

7.36

2.60

12.0

Fungal

ECP37863.1

Aedes aegypti (yellow fever mosquito)

30%

37%

4.63

4.81

8.19

Animal

EBW92904.1

Cryptococcus neoformans (basidiomycetes)

15%

38%

10.9

7.74

2.11

Plant

  1. NOTE.–Ten unknown bHLH sequences from a marine environmental sample as identified by InterPro. The attributes of the best BLAST hit are reported (species, coverage, identity). The results of the CVA{all} are also reported along with the distance of the bHLH sequence to Plant, Animal, and Fungal Kingdoms. The predicted Kingdom of origin is also reported.