Table 2 Coding regions, intron location and length of 57 PabHLH motifs
Family | Gene name | Genomic coding sequence(s) | Intron (location,length) | Group | ||
|---|---|---|---|---|---|---|
| Â | Â | Contig no. | Frame | Coding region(s) | Â | Â |
ASCa | PaAse1 | AEAC01008798.1 | +3 | 9033-9242 | Â | A |
ASCa | PaAse2 | AEAC01008800.1 | +2 | 11015-11191 | Â | A |
E12/E47 | PaDa | AEAC01014068.1 | +3 | 28419-28447 | Basic: 805 bp | A |
+1 | 29253-29385 | |||||
MyoD | PaNau | AEAC01019196.1 | −2 | 74906-74862 | Helix 1: 1290bp | A |
−2 | 73571-73461 | |||||
Ngn | PaTap(bp) | AEAC01026729.1 | −1 | 32156-31998 |  | A |
Mist | PaMistr1 | AEAC01003460.1 | −2 | 3518-3456 | Helix 1: 100bp | A |
−3 | 3355-3260 | |||||
Mist | PaMistr2 | AEAC01025732.1 | −1 | 1835-1773 | Helix 1: 788bp | A |
−3 | 984-889 | |||||
Beta3 | PaOli | AEAC01025379.1 | +2 | 21989-22153 | Â | A |
Atonal | PaCato | AEAC01014266.1 | −1 | 26350-26192 |  | A |
Atonal | PaAto | AEAC01015400.1 | +2 | 188-346 | Â | A |
Atonal | PaAmos | AEAC01014265.1 | −1 | 11834-11676 |  | A |
Net | PaNet | AEAC01000094.1 | +1 | 43-201 | Â | A |
MyoRa | PaMyoR | AEAC01020981.1 | −1 | 91681-91523 |  | A |
Mesp | PaSage | AEAC01024430.1 | −2 | 277-116 |  | A |
Paraxis | PaPxs | AEAC01022136.1 | +3 | 27672-27715 | Helix 1: 560bp | A |
+2 | 28276-28390 | |||||
Twist | PaTwi1 | AEAC01021518.1 | −3 | 26828-26673 |  | A |
Twist | PaTwi2 | AEAC01021518.1 | −3 | 48350-48195 |  | A |
PTFa | PaFer1 | AEAC01026349.1 | +1 | 45976-46134 | Â | A |
PTFb | PaFer2 | AEAC01016863.1 | −3 | 13162-13119 | Helix 1: 410bp | A |
−2 | 12708-12594 | |||||
PTFb | PaFer3 | AEAC01022136.1 | +2 | 110825-110905 | Helix 1: 2060bp | A |
+1 | 112966-113043 | |||||
Hand | PaHand | AEAC01000415.1 | +1 | 31600-31758 | Â | A |
SCL | PaSCL | AEAC01013335.1 | +2 | 41306-41445 | Helix 2: 769bp | A |
+3 | 42215-42233 | |||||
NSCL | PaNSCL | AEAC01011813.1 | −1 | 35707-35685 | Basic: 536bp | A |
−3 | 35148-34998 | |||||
Mnt | PaMnt1 | AEAC01010687.1 | +1 | 58000-58008 | Helix 2: 2123bp | B |
+2 | 55730-55876 | |||||
Mnt | PaMnt2 | AEAC01009610.1 | +1 | 110044-110202 | Â | B |
Max | PaMax1 | AEAC01023724.1 | +3 | 2178-2336 | Â | B |
Max | PaMax2 | AEAC01012273.1 | +1 | 1648-1803 | Â | B |
Myc | PaDm | AEAC01001866.1 | −3 | 39047-38889 |  | B |
USF | PaUSF1 | AEAC01020973.1 | −2 | 90699-90538 | Loop: 88bp | B |
−3 | 90449-90399 | |||||
USF | PaUSF2 | AEAC01025009.1 | −1 | 32215-32075 | Loop: 101bp | B |
−3 | 31973-31923 | |||||
MITF | PaMitf | AEAC01022111.1 | +2 | 23396-23417 | Basic: 5715bp | B |
+2 | 29133-29208 | Loop: 7943bp | ||||
+1 | 37152-37233 | Â | ||||
AP4 | PaCrp1 | AEAC01009287.1 | +3 | 29454-29564 | locate on two separate contigs | B |
AEAC01009292.1 | +2 | 42008-42052 | ||||
AP4 | PaCrp2 | AEAC01008415.1 | +2 | 21659-21817 | Â | B |
TF4 | PaBmx | AEAC01010529.1 | −1 | 64180-64010 |  | B |
MLX | PaMLX | AEAC01022037.1 | −1 | 166446-166282 |  | B |
SREBP | PaSREBP | AEAC01008623.1 | −2 | 34731-34589 | Helix 2: 82bp | B |
−3 | 34506-34497 | |||||
SRC | PaTai | AEAC01016429.1 | −3 | 7000-6993 | Basic: 2799bp | B |
−3 | 4193-4040 | |||||
Clock | PaClk1 | AEAC01024883.1 | −3 | 2390-2386 | Basic: 117bp | C |
−3 | 2268-2121 | |||||
Clock | PaClk2 | AEAC01008322.1 | +3 | 17766-17927 | Â | C |
AHR | PaDys1 | AEAC01000476.1 | −3 | 12657-12496 |  | C |
AHR | PaDys2 | AEAC01002106.1 | −1 | 11804-11649 |  | C |
AHR | PaSs | AEAC01016399.1 | +2 | 38537-38698 | Â | C |
Sim | PaSim | AEAC01018973.1 | +2 | 52010-52171 | Â | C |
Trh | PaTrh | AEAC01014876.1 | −3 | 10700-10539 |  | C |
HIF | PaSima | AEAC01025720.1 | −1 | 31971-31810 |  | C |
ARNT | PaTgo | AEAC01022806.1 | −1 | 23646-23485 |  | C |
Bmal | PaCyc | AEAC01003406.1 | +3 | 16767-16771 | Basic: 1814bp | C |
+2 | 18586-18742 | |||||
Emc | PaEmc | AEAC01012314.1 | +1 | 2998-3096 | Â | D |
Hey | PaHey | AEAC01012628.1 | +1 | 61852-62019 | Â | E |
Hey | PaStich1 | AEAC01002103.1 | +3 | 5010-5177 | Â | E |
H/E(spl) | PaH1 | AEAC01020843.1 | +1 | 70384-70389 | Basic: 406bp | E |
Loop: 272bp | ||||||
+2 | 70796-70891 | |||||
+1 | 71164-71235 | |||||
H/E(spl) | PaH2 | AEAC01020833.1 | −2 | 8228-8223 | Basic: 301bp | E |
−3 | 7921-7826 | Loop: 3123bp | ||||
−3 | 4702-4631 |  | ||||
H/E(spl) | PaSide | AEAC01019264.1 | −1 | 1124-957 | locate on two separate contigs | E |
AEAC01019265.1 | −2 | 1044-1039 | ||||
H/E(spl) | PaE(spl)1 | AEAC01003976.1 | +1 | 4951-4956 | Basic: 1338bp | E |
+1 | 6295-6384 | Loop: 2233bp | ||||
+2 | 8618-8695 | Â | ||||
H/E(spl) | PaE(spl)2 | AEAC01003969.1 | −2 | 11262-11257 | Basic: 199bp | E |
−3 | 11057-10890 | |||||
H/E(spl) | PaE(spl)3 | AEAC01003972.1 | +2 | 36986-37159 | Â | E |
COE | Pakn(col) | AEAC01019320.1 | −3 | 1427-1427 | Helix 1: 197bp | F |
|  |  |  | −2 | 1229-1096 |  |  |