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Table 2 Genes found in both populations with statistically significant changes in expression after thermal stress

From: Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

 

Fold change

 

Contig identification

SD

SC

Gene Ontology annotation

SD Accession

SC Accession

Up-regulated in both

hspbeta-1 #2

22.9

4.5

response to stress; response to heat

JW506232

JW525782

hspbeta-1 #3

24.6

4.2

response to stress

JW506234

JW525781

hspbeta-1 #4

105.2

4.7

response to heat

JW506233

JW525780

hsp20 #1

38.17

3.0

response to stress; response to heat

JW519178

JW525783

hsp70 #1

2.5

1.33

ATP binding; response to stress; auxin biosynthetic process

JW519142

JW525772

hsp70 #2

224.3

7.86

mitotic cell cycle; auxin biosynthetic process; response to heat; ATP binding; response to xenobiotic stimulus; DNA replication initiation; camera- type eye morphogenesis; response to cadmium ion; negative regulation of apoptosis; nucleus

JW519350

JW526654

hsp70 #5

13.0

3.8

ATP binding; response to stress; auxin biosynthetic process

JW506905

JW526653

hsp70 #9

460.3

7.3

ATP binding; response to stress; auxin biosynthetic process

N/A

N/A

hsp90 #1

5.8

3.3

protein folding; cytoplasm; unfolded protein binding; ATP binding; response to stress

JW506231

JW525777

Hypothetical protein

1.3

1.4

 

JW506500

JW533424

Involucrin, putative

12.6

3.8

apoptosis; protein binding

JW507027

JW526798

Map kinase-interacting serine Threonine-protein kinase 1

1.7

2.3

 

JW507795

JW527737

Midline fasciclin

3.6

4.9

 

JW508028

JW527995

Polyubiquitin

2.2

2.5

viral protein processing; proteolysis; serine-type endopeptidase activity; EC 3.4.21.0

JW519561

JW535653

Transcription factor kayak

3.6

4.3

regulation of transcription, DNA-dependent; sequence- specific DNA binding; protein dimerization activity; DNA binding; transcription factor activity; nucleus

JW519889

JW538428

Ubiquitin

2.4

2.4

 

JW519952

JW532240

Unknown

1.1

2.1

 

JW513666

JW533072

Unknown

7.1

3.7

 

JW513718

JW529892

Unknown

174.3

25.3

 

JW514975

JW531801

Unknown

46.2

9.4

 

N/A

N/A

Unknown

1.8

1.4

 

N/A

N/A

Unknown

16.4

1.9

 

N/A

 

Unknown

4.3

2

 

JW518153

N/A

Unknown

6.2

1.8

 

JW518470

JW532411

Unknown

460.3

7.3

 

N/A

N/A

Down-regulated in both

60s ribosomal protein L14

0.79

0.58

intracellular

JW518618

JW521020

ATP synthase subunit 6

0.78

0.67

oxidation reduction; mitochondrial

DQ913891

DQ917374

Cellular retinoic acid- binding protein 2

0.61

0.49

lipid binding; binding; transporter activity; transport

JW503430

JW522628

Cytochrome oxidase subunit 3

0.816

0.69

oxidation reduction; mitochondrial

DQ913891

DQ917374

Ferritin heavy chain 1

0.48

0.49

transition metal ion binding; cellular iron ion homeostasis; oxidoreductase activity; ferric iron binding; oxidation reduction; iron ion transport

JW505400

JW524830

Ferritin middle subunit 216/heavy chain polypeptide 1

0.71

0.61

cellular iron ion homeostasis; oxidoreductase activity; ferric iron binding; oxidation reduction; iron ion transport

N/A

JW524829

NADH dehydrogenase 4L

0.73

0.67

oxidation reduction; mitochondrial

DQ913891

DQ917374

NADH dehydrogenase subunit 1

0.71

0.7

oxidation reduction; mitochondrial

DQ913891

DQ917374

NADH dehydrogenase subunit 2

0.74

0.69

oxidation reduction; mitochondrial

DQ913891

DQ917374

NADH dehydrogenase subunit 4

0.73

0.71

oxidation reduction; mitochondrial

DQ913891

DQ917374

NADH dehydrogenase subunit 5

0.85

0.73

oxidation reduction; mitochondrial

DQ913891

DQ917374

NADH dehydrogenase subunit 6

0.71

0.67

oxidation reduction; mitochondrial

DQ913891

DQ917374

Nuclear protein 1/Serine threonine-protein phosphatase

0.69

0.59

binding; DNA binding

JW508743

JW537408

Unknown

0.67

0.56

 

JW517373

JW531354

Population-specific direction of response

3,4-dihydroxy-2- butanone-4-phosphate synthase

0.42

2.81

metal ion binding; riboflavin biosynthetic process; isomerase activity; EC 4.1.99.12

JW517629

N/A

Cell wall-associated hydrolase

0.64

1.67

hydrolase activity

JW503411

JW522621

Cell wall-associated hydrolase

0.53

3.39

hydrolase activity

JW507653

JW527565

Cell wall-associated hydrolase

0.39

2.41

hydrolase activity

JW503414

JW527566

Cell wall-associated hydrolase

0.23

1.6

hydrolase activity

JW503409

JW522614

Cell wall-associated hydrolase

0.23

2.9

hydrolase activity

N/A

JW522624

Conserved protein

0.61

2.9

 

JW505232

JW524634

Conserved protein

0.57

3.0

 

JW504216

JW523492

Cuticle protein 248

32.9

0.46

structural constituent of cuticle

JW504378

JW523655

Cuticle protein 281/502

2.3

0.3

structural constituent of cuticle

JW504361

JW523649

Cuticle protein 283/409

36.6

0.24

structural constituent of cuticle

JW504364

JW523634

Cuticle protein 541/577

11.0

0.27

structural constituent of cuticle

JW504368

JW523638

Cuticle protein 645/704

9.3

0.42

structural constituent of cuticle

JW504358

JW523633

Cuticle protein 7/414

4.6

0.32

structural constituent of cuticle

JW504393

JW523650

Ferritin chloroplast expressed

2.9

0.61

iron ion homeostasis; oxidoreductase activity; iron binding

JW519009

JW524836

Elegans protein

0.61

2.0

signal transducer activity; membrane; signal transduction; embryonic development ending in seed dormancy; protein binding; cellular component

JW505050

JW524418

Hypothetical protein

1.5

0.65

 

JW519182

JW526134

Hypothetical protein

0.44

3.7

 

JW506539

JW526192

Hypothetical protein

0.24

4.1

 

JW506786

JW526524

Leucine-rich protein

0.46

4.6

 

JW519332

JW526187

Serine acetyltransferase

0.69

3.1

acyltransferase activity

JW504201

JW537250

Unknown

4.3

0.19

 

N/A

N/A

Unknown

2.1

0.69

 

JW518261

JW532321

Unknown

2.0

0.47

 

JW517851

JW533144

Unknown

1.7

0.69

 

JW518175

JW525297

  1. N/A = contigs for which a NCBI accession was not created because their sequences were shorter than the minimum length allowed in a Transcriptome Shotgun Assembly (TSA) submission.
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BMC Ecology and Evolution

ISSN: 2730-7182

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