Table 3 Main characteristics of the strains used in this study
Strain | Phylogenetic group | Pathotypea | Genome size (Mb) | Accession number (MicroScope) |
|---|---|---|---|---|
Escherichia coli | ||||
K12 W3110 | A | Commensal | 4.5 | GBKW3110_AC_000091 |
HS | A | Commensal | 4.5 | EcHS_A NC_009800 |
ATCC8739 | A | Commensal | 4.6 | EcolC_NC_010468 |
K12 DH10B | A | Commensal | 4.6 | ECDH10B_NC_010473 |
K12 BW2952 | A | Commensal | 4.5 | BWG_NC_012759 |
BL21(DE3) | A | Commensal | 4.5 | ECBD_NC_012947 |
B REL606 | A | Commensal | 4.5 | ECB_NC_012967 |
K12 MG1655 | A | Commensal | 4.5 | U00096 |
E24377A | B1 | InPEc(ETEC) | 4.9 | EcE24377A_NC_009801 |
SE11 | B1 | Commensal | 4.8 | ECSE_NC_011415 |
IAI1 | B1 | Commensal | 4.6 | ECIAI1_EIAI1v2 |
55989 | B1 | InPEc(EAEC) | 5 | EC55989_EC55v2 |
O103:H2 12009 | B1 | InPEc(EHEC) | 5.3 | ECO103_NC_013353 |
O26:H11 11368 | B1 | InPEc(EHEC) | 5.6 | ECO26_NC_013361 |
O111:H- 11128 | B1 | InPEc(EHEC) | 5.2 | ECO111_NC_013364 |
CFT073 | B2 | ExPEc | 5.1 | c NC_004431 |
UTI89 | B2 | ExPEc | 5 | UTI89_C NC_007946 |
536 | B2 | ExPEc | 4.8 | ECP_NC_008253 |
APEC O1 | B2 | ExPEc | 5 | APECO1_NC_008563 |
O127:H6 E2348/69 | B2 | InPEc(EPEC) | 4.9 | E2348C_NC_011601 |
S88 | B2 | ExPEc | 4.9 | ECS88_ECOS88V2 |
ED1a | B2 | Commensal | 5.1 | ECED1_ED1av2 |
UMN026 | D | ExPEc | 5.1 | ECUMNv2_ESCUMv2 |
O157:H7 EDL933 | E | InPEc(EHEC) | 5.4 | Z NC_002655 |
O157:H7 Sakai | E | InPEc(EHEC) | 5.4 | Ecs NC_002695 |
O157:H7 EC4115 | E | InPEc(EHEC) | 5.4 | ECH74115_NC_011353 |
SMS-3-5 | F | Commensal | 5 | EcSMS35_NC_010498 |
IAI39 | F | ExPEc | 5 | ECIAI39_EIAI39v2 |
Shigella | ||||
S. boydii 4 227 (Sb 227) | S(S1) | Shigellosis | 4.4 | SBO NC_007613 |
S. flexneri 2a 301 (Sf 301) | S(S3) | Shigellosis | 4.5 | SF NC_004337 |
S. flexneri 2a 2457 T (Sf 2457 T) | S(S3) | Shigellosis | 4.5 | S NC_004741 |
S. flexneri 5 8401 (Sf 8401) | S(S3) | Shigellosis | 4.5 | SFV_NC_008258 |
S. dysenteriae 1 197 (Sd 197) | S(SD1) | Shigellosis | 4.3 | SDY NC_007606 |
S. sonnei 046 (Ss 046) | S(SS) | Shigellosis | 4.7 | SSO_NC_007384 |
Outgroup | ||||
E. fergusonii ATCC 35496 | Outgroup | Commensal | 4.5 | EFER_EFERv2 |
S. enterica enterica LT2 | Outgroup | Pathogen | 4.7 | STM NC_003197 |