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Table 2 snoRNAs in deeply conserved introns

From: Comparative genomics of eukaryotic small nucleolar RNAs reveals deep evolutionary ancestry amidst ongoing intragenomic mobility

Group

snoRNA

Species

Supergroup

class

Cross-Supergroup comparison

ENSG00000221983

H06I04.8

C. elegans

Opisthokonts

CD

No evidence for homology

 

RF00332

A. thaliana

Archaeplastida

CD

 

ENSG00000142541

RF00133

Mammals

Opisthokonts

CD

Unrelated classes //

 

FBgn0260002

D. melanogaster

Opisthokonts

HACA

No evidence for homology

 

OssnoR30

O. sativa

Archaeplastida

CD

 

ENSG00000143947

H06I04.8

C. elegans

Opisthokonts

HACA

Unrelated classes

 

AtsnoR91

A. thaliana

Archaeplastida

CD

 
 

RF00332

O. sativa

Archaeplastida

CD

 

ENSG00000213516

RF00270

Vertebrates

Opisthokonts

CD

Unrelated classes

 

RF01287

V. vinifera

Archaeplastida

HACA

 

ENSG00000204628

RF00270

Vertebrates

Opisthokonts

CD

No evidence for homology

 

Pfa_snoR_05

P. falciparum

Chromalveolata

CD

 

ENSG00000241343

Fbgn0065055

D. melanogaster

Opisthokonts

HACA

Unrelated classes

 

RF00202

O. sativa

Archaeplastida

CD

 
 

RF00147

P. trichocarpa

Archaeplastida

CD

 

ENSG00000147274*

RF00270

Vertebrates

Opisthokonts

CD

Unrelated classes

 

RF01287

V. vinifera

Archaeplastida

HACA

 

ENSG00000149273

RF00067

Vertebrates

Opisthokonts

CD

Unrelated classes

 

RF01432

O. sativa

Archaeplastida

HACA

 

ENSG00000170515

Fbgn0082994

D. melanogaster

Opisthokonts

HACA

Unrelated classes

 

RF00218

A. thaliana

Archaeplastida

CD

 
 

RF00218

V. vinifera

Archaeplastida

CD

 

ENSG00000165502

Fbgn0065055

D. melanogaster

Opisthokonts

HACA

Unrelated classes

 

RF00202

O. sativa

Archaeplastida

CD

 

ENSG00000232055**

RF00150

M. domestica

Opisthokonts

CD

No evidence for homology

 

RF00145

O. sativa

Archaeplastida

CD

 
 

RF00067

O. sativa

Archaeplastida

CD

 

ENSG00000215472

RF00151

Vertebrates

Opisthokonts

CD

No evidence for homology

 

RF00067

P. vivax

Chromalveolata

CD

 
 

Pfa_snoR_21

P. falciparum

Chromalveolata

CD

 
 

RF00067

T. annulata

Chromalveolata

CD

 

ENSG00000215472

RF00151

Vertebrates

Opisthokonts

CD

Unrelated classes

 

Fbgn0086602

D. melanogaster

Opisthokonts

HACA

No evidence for homology

 

Fbgn0086668

D. melanogaster

Opisthokonts

HACA

 
 

Fbgn0083013

D. melanogaster

Opisthokonts

HACA

 
 

RF001231

A. thaliana

Archaeplastida

HACA

 
 

RF001231

V. vinifera

Archaeplastida

HACA

 
 

RF001231

O. sativa

Archaeplastida

HACA

 

ENSG00000145592

RF00577

D. rerio

Opisthokonts

CD

No evidence for homology

 

RF00200

O. sativa

Archaeplastida

CD

 
 

RF00267

O. sativa

Archaeplastida

CD

 
 

RF00093

O. sativa

Archaeplastida

CD

 

ENSG00000109971

RF00016

D. rerio

Opisthokonts

CD

Unrelated classes

     

No evidence for homology

 

RF00482

O. sativa

Archaeplastida

HACA

 
 

CL00053

O. sativa

Archaeplastida

CD

 
 

AtsnoR93

A. thaliana

Archaeplastida

HACA

 
  1. * Set of 7 human paralogues.
  2. ** Set of 2 human paralogues.