From: Evolution of major histocompatibility complex class I and class II genes in the brown bear
Primer pair no. | Primer name | Primer sequence (5’-3’) | Gene | Amplicon size (bp) |
---|---|---|---|---|
1 | 1UNIex1L | TCCTsCTGCTrCTsTCGG | MHC class I, 1st exon | 625 |
1UNIex4R | GCCCAGCACCTCAGGGTG | MHC class I, 4th exon | ||
2 | 2DRBUNIex1L | GAyryTGATGrTGCTGArC | MHC class II DRB, 1st exon | 343 |
2DRBUNIex3R | CCAGGAGGkTGTGrTGCTGCA | MHC class II DRB, 3rd exon | ||
3 | 2DQAUNIex1L | CCwsTGGArGTGAAGAsAT | MHC class II DQA, 1st exon | 255 |
2DQAUNIex3R | AACACwGTsACCTCAGGAAC | MHC class II DQA, 3rd exon | ||
4 | 2DQBUNIex1L | GGCTGAGGGCAGAGACTC | MHC class II DQB, 1st exon | 282 |
2DQBUNIex3R | TGGAyGGGrAGATrGTCACTGT | MHC class II DQB, 3rd exon | ||
5 | URS_1_F | GCTCsCACTCCCTGAGGTAT | MHC class I, | 228 |
URS_1_R | CCwCGCTCTGGTTGTAGTA | 2nd exon | ||
6 | URS_DRB_F_3 | TTCACCAACGGsACGGAGCGG | MHC class II DRB, | 192 |
URS_DRB_R | CTTGTCGCyGCACCrkGAAGCT | 2nd exon | ||
7 | URS_DQA_F | CTGACCATGTTGCTTACTACGG | MHC class II DQA, | 202 |
URS_DQA_R | CATTGGTAGCAGCGrTATAGTTGGA | 2nd exon | ||
8 | URS_DQB_F | AGGATTTCGTGCTCCAGyTTAAG | MHC class II DQB, | 224 |
URS_DQB_R | CTCGCCGCTGCrGGATGArsCTG | 2nd exon | ||
9 | URS_1_F | CGTATCGCCTCCCTCGCGCCATCAG | MHC class I, 2nd exon | 228 |
xxxxxxGCTCSCACTCCCTGAGGTAT | ||||
URS_1_R | CTATGCGCCTTGCCAGCCCGCTCAG | |||
xxxxxxCCwCGCTCTGGTTGTAGTA | ||||
10 | URS_DRB_F_3 | CGTATCGCCTCCCTCGCGCCATCAG | MHC class II DRB, 2nd exon | 192 |
xxxxxxTTCACCAACGGsACGGAGCGG | ||||
URS_DRB_R | CTATGCGCCTTGCCAGCCCGCTCAG | |||
xxxxxxCTTGTCGCyGCACCrkGAAGCT |